miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12640 3' -49.7 NC_003345.1 + 34076 0.66 0.980398
Target:  5'- ---cACCACGgaCGAUGGUUuCCAGCg- -3'
miRNA:   3'- cuaaUGGUGUa-GUUGCCAA-GGUCGgg -5'
12640 3' -49.7 NC_003345.1 + 67828 0.66 0.980398
Target:  5'- cGAUUAgaACAUCAACc--UCCuGCCCg -3'
miRNA:   3'- -CUAAUggUGUAGUUGccaAGGuCGGG- -5'
12640 3' -49.7 NC_003345.1 + 27746 0.66 0.980398
Target:  5'- ---aGCCACGUCAGCGGg-CCgaauguuggGGUCUg -3'
miRNA:   3'- cuaaUGGUGUAGUUGCCaaGG---------UCGGG- -5'
12640 3' -49.7 NC_003345.1 + 21233 0.66 0.972382
Target:  5'- cGAUUACCuccacguCGUCAGCG--UCCAcgaugagggacuGCCCg -3'
miRNA:   3'- -CUAAUGGu------GUAGUUGCcaAGGU------------CGGG- -5'
12640 3' -49.7 NC_003345.1 + 25608 0.67 0.965867
Target:  5'- cGGUUcACUACGUCAuggGCGGUgacauuaucaCCGGCuCCg -3'
miRNA:   3'- -CUAA-UGGUGUAGU---UGCCAa---------GGUCG-GG- -5'
12640 3' -49.7 NC_003345.1 + 25175 0.67 0.965867
Target:  5'- ---gACCACAUCAGCaGUaUCgAGCgCa -3'
miRNA:   3'- cuaaUGGUGUAGUUGcCA-AGgUCGgG- -5'
12640 3' -49.7 NC_003345.1 + 26296 0.67 0.965867
Target:  5'- ---aGCCACGUCAGCGGgagacugUCAGagacuCCg -3'
miRNA:   3'- cuaaUGGUGUAGUUGCCaa-----GGUCg----GG- -5'
12640 3' -49.7 NC_003345.1 + 36942 0.67 0.965867
Target:  5'- aGAUUucACCGgAgacUCAGCGGgcugUUCAGCCg -3'
miRNA:   3'- -CUAA--UGGUgU---AGUUGCCa---AGGUCGGg -5'
12640 3' -49.7 NC_003345.1 + 33702 0.67 0.965867
Target:  5'- --aUGCCACAUUAGCGauacuUUCCucGUCCa -3'
miRNA:   3'- cuaAUGGUGUAGUUGCc----AAGGu-CGGG- -5'
12640 3' -49.7 NC_003345.1 + 72326 0.67 0.958339
Target:  5'- ---cGCCGCc-CGGCGGcUCCAGCgCg -3'
miRNA:   3'- cuaaUGGUGuaGUUGCCaAGGUCGgG- -5'
12640 3' -49.7 NC_003345.1 + 14586 0.68 0.940047
Target:  5'- cGUU-CCACGgcgcUCGugGGUcgCCAGCCg -3'
miRNA:   3'- cUAAuGGUGU----AGUugCCAa-GGUCGGg -5'
12640 3' -49.7 NC_003345.1 + 74909 0.68 0.940047
Target:  5'- cGAUUuuuuCCACGUCAGCGGggUCAacgucgguuGCuCCa -3'
miRNA:   3'- -CUAAu---GGUGUAGUUGCCaaGGU---------CG-GG- -5'
12640 3' -49.7 NC_003345.1 + 12391 0.69 0.915352
Target:  5'- aAUUGgCACAcuucgaugagucguUCAuCGGcUCCGGCCCa -3'
miRNA:   3'- cUAAUgGUGU--------------AGUuGCCaAGGUCGGG- -5'
12640 3' -49.7 NC_003345.1 + 56188 0.69 0.910833
Target:  5'- ---aACCAUAUCuACGGUuuaaUCCAaauaucGCCCu -3'
miRNA:   3'- cuaaUGGUGUAGuUGCCA----AGGU------CGGG- -5'
12640 3' -49.7 NC_003345.1 + 73614 0.69 0.904138
Target:  5'- ---gGCCGuaggaguaguCGUCAGCGGcUCCGcGCCCc -3'
miRNA:   3'- cuaaUGGU----------GUAGUUGCCaAGGU-CGGG- -5'
12640 3' -49.7 NC_003345.1 + 58089 0.69 0.897163
Target:  5'- ---cGCCACGUCuuGCGGUUCUucaAGUCa -3'
miRNA:   3'- cuaaUGGUGUAGu-UGCCAAGG---UCGGg -5'
12640 3' -49.7 NC_003345.1 + 59679 0.7 0.882392
Target:  5'- ---cACCGCGUCAAuaacCGGggCCAGCa- -3'
miRNA:   3'- cuaaUGGUGUAGUU----GCCaaGGUCGgg -5'
12640 3' -49.7 NC_003345.1 + 46308 0.71 0.840942
Target:  5'- ----cCCGCcUCGAUGGUucugUCCAGCUCg -3'
miRNA:   3'- cuaauGGUGuAGUUGCCA----AGGUCGGG- -5'
12640 3' -49.7 NC_003345.1 + 17770 0.71 0.822716
Target:  5'- ---gGCCGCcgugaggugGUCGugGGaUUCAGCCCa -3'
miRNA:   3'- cuaaUGGUG---------UAGUugCCaAGGUCGGG- -5'
12640 3' -49.7 NC_003345.1 + 38524 0.72 0.77372
Target:  5'- -----aCGCAUCGAgGGUUUCGGCCa -3'
miRNA:   3'- cuaaugGUGUAGUUgCCAAGGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.