miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12642 3' -52.5 NC_003345.1 + 3728 0.66 0.904896
Target:  5'- ---aGCuCCGGuguAG-GCcGCUCCGCGACc -3'
miRNA:   3'- auuaCG-GGCU---UCaCGaUGAGGUGCUG- -5'
12642 3' -52.5 NC_003345.1 + 46349 0.66 0.904896
Target:  5'- ---aGUCuCGAAGUaCcACUCCACGGCc -3'
miRNA:   3'- auuaCGG-GCUUCAcGaUGAGGUGCUG- -5'
12642 3' -52.5 NC_003345.1 + 4711 0.66 0.897989
Target:  5'- aGAUGCuCUGAAcGUGCUGuaaUCCAaCGAUg -3'
miRNA:   3'- aUUACG-GGCUU-CACGAUg--AGGU-GCUG- -5'
12642 3' -52.5 NC_003345.1 + 27350 0.66 0.890808
Target:  5'- --uUGUUCGGAGUGCggugACUUCGaGACg -3'
miRNA:   3'- auuACGGGCUUCACGa---UGAGGUgCUG- -5'
12642 3' -52.5 NC_003345.1 + 62980 0.66 0.874861
Target:  5'- --cUGCUCGGgacucugAGgGCUACUCCACG-Cu -3'
miRNA:   3'- auuACGGGCU-------UCaCGAUGAGGUGCuG- -5'
12642 3' -52.5 NC_003345.1 + 26165 0.66 0.874072
Target:  5'- cGAUGCCCGGagcgacgauucacggAGUcucugacagucucccGCUgacgugGCUCUACGACg -3'
miRNA:   3'- aUUACGGGCU---------------UCA---------------CGA------UGAGGUGCUG- -5'
12642 3' -52.5 NC_003345.1 + 16364 0.67 0.867676
Target:  5'- ---aGCCCG----GUUGCUCUACGGCg -3'
miRNA:   3'- auuaCGGGCuucaCGAUGAGGUGCUG- -5'
12642 3' -52.5 NC_003345.1 + 8121 0.67 0.859456
Target:  5'- ---cGaCCCGAAGc-CU-CUCCACGACg -3'
miRNA:   3'- auuaC-GGGCUUCacGAuGAGGUGCUG- -5'
12642 3' -52.5 NC_003345.1 + 46474 0.68 0.824231
Target:  5'- -uGUGgCCGAGGUuacacGCcucgUACUCCACGAg -3'
miRNA:   3'- auUACgGGCUUCA-----CG----AUGAGGUGCUg -5'
12642 3' -52.5 NC_003345.1 + 45595 0.68 0.824231
Target:  5'- cUGAUGCCCG-AGUcGCagaACUCUugGAa -3'
miRNA:   3'- -AUUACGGGCuUCA-CGa--UGAGGugCUg -5'
12642 3' -52.5 NC_003345.1 + 57052 0.68 0.814885
Target:  5'- -uGUGUCCGggGUGCUGgUgCAUcauuGGCa -3'
miRNA:   3'- auUACGGGCuuCACGAUgAgGUG----CUG- -5'
12642 3' -52.5 NC_003345.1 + 28976 0.69 0.744583
Target:  5'- aUGAUGCCCGAGGU-CgagaaCUACGACa -3'
miRNA:   3'- -AUUACGGGCUUCAcGauga-GGUGCUG- -5'
12642 3' -52.5 NC_003345.1 + 14672 0.71 0.635257
Target:  5'- ---aGCgUGucGUGCUuCUCCGCGACg -3'
miRNA:   3'- auuaCGgGCuuCACGAuGAGGUGCUG- -5'
12642 3' -52.5 NC_003345.1 + 52071 1.07 0.003211
Target:  5'- cUAAUGCCCGAAGUGCUACUCCACGACc -3'
miRNA:   3'- -AUUACGGGCUUCACGAUGAGGUGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.