Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12642 | 3' | -52.5 | NC_003345.1 | + | 3728 | 0.66 | 0.904896 |
Target: 5'- ---aGCuCCGGuguAG-GCcGCUCCGCGACc -3' miRNA: 3'- auuaCG-GGCU---UCaCGaUGAGGUGCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 46349 | 0.66 | 0.904896 |
Target: 5'- ---aGUCuCGAAGUaCcACUCCACGGCc -3' miRNA: 3'- auuaCGG-GCUUCAcGaUGAGGUGCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 4711 | 0.66 | 0.897989 |
Target: 5'- aGAUGCuCUGAAcGUGCUGuaaUCCAaCGAUg -3' miRNA: 3'- aUUACG-GGCUU-CACGAUg--AGGU-GCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 27350 | 0.66 | 0.890808 |
Target: 5'- --uUGUUCGGAGUGCggugACUUCGaGACg -3' miRNA: 3'- auuACGGGCUUCACGa---UGAGGUgCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 62980 | 0.66 | 0.874861 |
Target: 5'- --cUGCUCGGgacucugAGgGCUACUCCACG-Cu -3' miRNA: 3'- auuACGGGCU-------UCaCGAUGAGGUGCuG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 26165 | 0.66 | 0.874072 |
Target: 5'- cGAUGCCCGGagcgacgauucacggAGUcucugacagucucccGCUgacgugGCUCUACGACg -3' miRNA: 3'- aUUACGGGCU---------------UCA---------------CGA------UGAGGUGCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 16364 | 0.67 | 0.867676 |
Target: 5'- ---aGCCCG----GUUGCUCUACGGCg -3' miRNA: 3'- auuaCGGGCuucaCGAUGAGGUGCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 8121 | 0.67 | 0.859456 |
Target: 5'- ---cGaCCCGAAGc-CU-CUCCACGACg -3' miRNA: 3'- auuaC-GGGCUUCacGAuGAGGUGCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 46474 | 0.68 | 0.824231 |
Target: 5'- -uGUGgCCGAGGUuacacGCcucgUACUCCACGAg -3' miRNA: 3'- auUACgGGCUUCA-----CG----AUGAGGUGCUg -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 45595 | 0.68 | 0.824231 |
Target: 5'- cUGAUGCCCG-AGUcGCagaACUCUugGAa -3' miRNA: 3'- -AUUACGGGCuUCA-CGa--UGAGGugCUg -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 57052 | 0.68 | 0.814885 |
Target: 5'- -uGUGUCCGggGUGCUGgUgCAUcauuGGCa -3' miRNA: 3'- auUACGGGCuuCACGAUgAgGUG----CUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 28976 | 0.69 | 0.744583 |
Target: 5'- aUGAUGCCCGAGGU-CgagaaCUACGACa -3' miRNA: 3'- -AUUACGGGCUUCAcGauga-GGUGCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 14672 | 0.71 | 0.635257 |
Target: 5'- ---aGCgUGucGUGCUuCUCCGCGACg -3' miRNA: 3'- auuaCGgGCuuCACGAuGAGGUGCUG- -5' |
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12642 | 3' | -52.5 | NC_003345.1 | + | 52071 | 1.07 | 0.003211 |
Target: 5'- cUAAUGCCCGAAGUGCUACUCCACGACc -3' miRNA: 3'- -AUUACGGGCUUCACGAUGAGGUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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