miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12645 3' -57.1 NC_003345.1 + 50048 0.66 0.744986
Target:  5'- gGAGCCUUCGUUgCCGUUGGcGCu--- -3'
miRNA:   3'- -CUUGGAGGCAGgGGCGACCuUGcacu -5'
12645 3' -57.1 NC_003345.1 + 72544 0.66 0.704151
Target:  5'- --uCCUCCGUCugcucgauuCCCGUgccgGGAACGUu- -3'
miRNA:   3'- cuuGGAGGCAG---------GGGCGa---CCUUGCAcu -5'
12645 3' -57.1 NC_003345.1 + 46749 0.66 0.693754
Target:  5'- gGAGCUUcCCG-CCgCGUcauuUGGGACGUGAu -3'
miRNA:   3'- -CUUGGA-GGCaGGgGCG----ACCUUGCACU- -5'
12645 3' -57.1 NC_003345.1 + 3298 0.67 0.661219
Target:  5'- gGAGCCUUCGUauuccuccggcucUCUCGUUGGcuCGUGAu -3'
miRNA:   3'- -CUUGGAGGCA-------------GGGGCGACCuuGCACU- -5'
12645 3' -57.1 NC_003345.1 + 46707 0.67 0.651715
Target:  5'- uGAcCCUCCcacUUCUCGC-GGAGCGUGAc -3'
miRNA:   3'- -CUuGGAGGc--AGGGGCGaCCUUGCACU- -5'
12645 3' -57.1 NC_003345.1 + 34059 0.68 0.577833
Target:  5'- --uCCagCGUCuCCCGCUGGAcuuccuuCGUGAg -3'
miRNA:   3'- cuuGGagGCAG-GGGCGACCUu------GCACU- -5'
12645 3' -57.1 NC_003345.1 + 31995 0.73 0.31753
Target:  5'- aGAACUUCCccgccuacuucuacGUCCCUGCcgaGGAACGUGGc -3'
miRNA:   3'- -CUUGGAGG--------------CAGGGGCGa--CCUUGCACU- -5'
12645 3' -57.1 NC_003345.1 + 51984 0.73 0.312312
Target:  5'- uGAGCCaCCGgaacgUCCCGCUGGAGC-UGAg -3'
miRNA:   3'- -CUUGGaGGCa----GGGGCGACCUUGcACU- -5'
12645 3' -57.1 NC_003345.1 + 49830 0.76 0.215879
Target:  5'- cAACCgggCCGUCguagCCCGgaGGAACGUGAa -3'
miRNA:   3'- cUUGGa--GGCAG----GGGCgaCCUUGCACU- -5'
12645 3' -57.1 NC_003345.1 + 54161 1.08 0.001257
Target:  5'- uGAACCUCCGUCCCCGCUGGAACGUGAu -3'
miRNA:   3'- -CUUGGAGGCAGGGGCGACCUUGCACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.