Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12645 | 3' | -57.1 | NC_003345.1 | + | 50048 | 0.66 | 0.744986 |
Target: 5'- gGAGCCUUCGUUgCCGUUGGcGCu--- -3' miRNA: 3'- -CUUGGAGGCAGgGGCGACCuUGcacu -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 72544 | 0.66 | 0.704151 |
Target: 5'- --uCCUCCGUCugcucgauuCCCGUgccgGGAACGUu- -3' miRNA: 3'- cuuGGAGGCAG---------GGGCGa---CCUUGCAcu -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 46749 | 0.66 | 0.693754 |
Target: 5'- gGAGCUUcCCG-CCgCGUcauuUGGGACGUGAu -3' miRNA: 3'- -CUUGGA-GGCaGGgGCG----ACCUUGCACU- -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 3298 | 0.67 | 0.661219 |
Target: 5'- gGAGCCUUCGUauuccuccggcucUCUCGUUGGcuCGUGAu -3' miRNA: 3'- -CUUGGAGGCA-------------GGGGCGACCuuGCACU- -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 46707 | 0.67 | 0.651715 |
Target: 5'- uGAcCCUCCcacUUCUCGC-GGAGCGUGAc -3' miRNA: 3'- -CUuGGAGGc--AGGGGCGaCCUUGCACU- -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 34059 | 0.68 | 0.577833 |
Target: 5'- --uCCagCGUCuCCCGCUGGAcuuccuuCGUGAg -3' miRNA: 3'- cuuGGagGCAG-GGGCGACCUu------GCACU- -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 31995 | 0.73 | 0.31753 |
Target: 5'- aGAACUUCCccgccuacuucuacGUCCCUGCcgaGGAACGUGGc -3' miRNA: 3'- -CUUGGAGG--------------CAGGGGCGa--CCUUGCACU- -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 51984 | 0.73 | 0.312312 |
Target: 5'- uGAGCCaCCGgaacgUCCCGCUGGAGC-UGAg -3' miRNA: 3'- -CUUGGaGGCa----GGGGCGACCUUGcACU- -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 49830 | 0.76 | 0.215879 |
Target: 5'- cAACCgggCCGUCguagCCCGgaGGAACGUGAa -3' miRNA: 3'- cUUGGa--GGCAG----GGGCgaCCUUGCACU- -5' |
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12645 | 3' | -57.1 | NC_003345.1 | + | 54161 | 1.08 | 0.001257 |
Target: 5'- uGAACCUCCGUCCCCGCUGGAACGUGAu -3' miRNA: 3'- -CUUGGAGGCAGGGGCGACCUUGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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