Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12667 | 3' | -53.7 | NC_003345.1 | + | 10195 | 0.66 | 0.858765 |
Target: 5'- cGUGUuGGcgUCGGCGUggaaaGUCGaagCCCCg -3' miRNA: 3'- -UAUAcCCuaAGUCGCAa----CAGCg--GGGG- -5' |
|||||||
12667 | 3' | -53.7 | NC_003345.1 | + | 10914 | 0.66 | 0.849585 |
Target: 5'- cGUcgGGGAgggagCAGUccuuacaGUUGUCGCCgCUg -3' miRNA: 3'- -UAuaCCCUaa---GUCG-------CAACAGCGGgGG- -5' |
|||||||
12667 | 3' | -53.7 | NC_003345.1 | + | 18963 | 0.67 | 0.833095 |
Target: 5'- --uUGGG--UCAGCGUaGUCuuuaGCUCCCu -3' miRNA: 3'- uauACCCuaAGUCGCAaCAG----CGGGGG- -5' |
|||||||
12667 | 3' | -53.7 | NC_003345.1 | + | 24896 | 0.67 | 0.786273 |
Target: 5'- ---aGGGGUUCAGCGagGgaacgacgCGCUCUCu -3' miRNA: 3'- uauaCCCUAAGUCGCaaCa-------GCGGGGG- -5' |
|||||||
12667 | 3' | -53.7 | NC_003345.1 | + | 64280 | 1.11 | 0.001513 |
Target: 5'- cAUAUGGGAUUCAGCGUUGUCGCCCCCg -3' miRNA: 3'- -UAUACCCUAAGUCGCAACAGCGGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home