miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12677 5' -58.5 NC_003345.1 + 29065 0.66 0.691071
Target:  5'- gUCGUCguGGGGGaagaaGGgCGGAGaaGGCUa -3'
miRNA:   3'- -AGCAGguCUCCCg----CCaGCCUCa-CUGG- -5'
12677 5' -58.5 NC_003345.1 + 6865 0.66 0.680801
Target:  5'- cUGcCCGGAGuGUGGUCGGGgaggucGUGACa -3'
miRNA:   3'- aGCaGGUCUCcCGCCAGCCU------CACUGg -5'
12677 5' -58.5 NC_003345.1 + 52739 0.66 0.660148
Target:  5'- cCGaCCggAGAGGGCGGgaaaaaGGAG-GACUu -3'
miRNA:   3'- aGCaGG--UCUCCCGCCag----CCUCaCUGG- -5'
12677 5' -58.5 NC_003345.1 + 56093 0.66 0.649782
Target:  5'- gUCGUCgGugguGGGGGCGGagGuGGUGGCUc -3'
miRNA:   3'- -AGCAGgU----CUCCCGCCagCcUCACUGG- -5'
12677 5' -58.5 NC_003345.1 + 37845 0.68 0.567023
Target:  5'- gUCGUCUaugucGGAGGGCuGGUCGGcuuucGACa -3'
miRNA:   3'- -AGCAGG-----UCUCCCG-CCAGCCuca--CUGg -5'
12677 5' -58.5 NC_003345.1 + 54262 0.68 0.556814
Target:  5'- aCGuUCCAGcGGGGaCGGagguucagacUCGGAGcGACCc -3'
miRNA:   3'- aGC-AGGUC-UCCC-GCC----------AGCCUCaCUGG- -5'
12677 5' -58.5 NC_003345.1 + 2122 0.68 0.546659
Target:  5'- -aGUCUgugaAGaAGGGCGG-CGaGAGUGACa -3'
miRNA:   3'- agCAGG----UC-UCCCGCCaGC-CUCACUGg -5'
12677 5' -58.5 NC_003345.1 + 55711 0.68 0.546659
Target:  5'- cUCGUCCGGcGGuGGUGGggCGG-GUGAaCCc -3'
miRNA:   3'- -AGCAGGUC-UC-CCGCCa-GCCuCACU-GG- -5'
12677 5' -58.5 NC_003345.1 + 329 0.7 0.458598
Target:  5'- aCGggCAGGGGGCGGggGGAGaGACg -3'
miRNA:   3'- aGCagGUCUCCCGCCagCCUCaCUGg -5'
12677 5' -58.5 NC_003345.1 + 77616 0.7 0.458598
Target:  5'- aCGggCAGGGGGCGGggGGAGaGACg -3'
miRNA:   3'- aGCagGUCUCCCGCCagCCUCaCUGg -5'
12677 5' -58.5 NC_003345.1 + 70762 1.12 0.000543
Target:  5'- cUCGUCCAGAGGGCGGUCGGAGUGACCg -3'
miRNA:   3'- -AGCAGGUCUCCCGCCAGCCUCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.