Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12683 | 5' | -55.8 | NC_003345.1 | + | 75338 | 1.06 | 0.001936 |
Target: 5'- cCGGGGAACCGCACAUUGGUCGGUCAAg -3' miRNA: 3'- -GCCCCUUGGCGUGUAACCAGCCAGUU- -5' |
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12683 | 5' | -55.8 | NC_003345.1 | + | 140 | 0.66 | 0.773782 |
Target: 5'- aCGGGGGACaggGgACGggGGcCGGUUAGa -3' miRNA: 3'- -GCCCCUUGg--CgUGUaaCCaGCCAGUU- -5' |
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12683 | 5' | -55.8 | NC_003345.1 | + | 77427 | 0.66 | 0.773782 |
Target: 5'- aCGGGGGACaggGgACGggGGcCGGUUAGa -3' miRNA: 3'- -GCCCCUUGg--CgUGUaaCCaGCCAGUU- -5' |
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12683 | 5' | -55.8 | NC_003345.1 | + | 51854 | 0.67 | 0.69151 |
Target: 5'- uCGGGGcuggAACCGUugAUgUGGUaaucgaCGGUCAGa -3' miRNA: 3'- -GCCCC----UUGGCGugUA-ACCA------GCCAGUU- -5' |
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12683 | 5' | -55.8 | NC_003345.1 | + | 42841 | 0.71 | 0.470681 |
Target: 5'- uGGGGugUCGUACAgaGGUCGGUgAGg -3' miRNA: 3'- gCCCCuuGGCGUGUaaCCAGCCAgUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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