miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13035 5' -54.6 NC_003390.1 + 6118 0.66 0.692024
Target:  5'- -aCGCCAUUAGCGGCCugCucauacagacgcaugAAGUUCUc -3'
miRNA:   3'- aaGUGGUAGUCGUUGGugG---------------UUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 27347 0.66 0.687539
Target:  5'- cUCACCAgccUCuaguGCAGCCuuCUcAGCCUCa -3'
miRNA:   3'- aAGUGGU---AGu---CGUUGGu-GGuUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 10818 0.66 0.686415
Target:  5'- -cCACCAUCAucaauggcugaucGCAACCGCUAcguuuucgaAGCaaCCCu -3'
miRNA:   3'- aaGUGGUAGU-------------CGUUGGUGGU---------UCG--GGG- -5'
13035 5' -54.6 NC_003390.1 + 41360 0.66 0.664988
Target:  5'- cUgGCCugguuacCAGCAGCCugCAGGUCUUg -3'
miRNA:   3'- aAgUGGua-----GUCGUUGGugGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 30967 0.66 0.664988
Target:  5'- gUCgAUgAUCGGCAAggUCACCGuGCCCUg -3'
miRNA:   3'- aAG-UGgUAGUCGUU--GGUGGUuCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 5927 0.66 0.663857
Target:  5'- -aCGCCAUCaauGGCAACCAUCAcaccgucagugggAGCUUg -3'
miRNA:   3'- aaGUGGUAG---UCGUUGGUGGU-------------UCGGGg -5'
13035 5' -54.6 NC_003390.1 + 10446 0.66 0.661592
Target:  5'- -aCGCCGUCGaucgugacgacuacGCAuCCGCCGAGgCUCu -3'
miRNA:   3'- aaGUGGUAGU--------------CGUuGGUGGUUCgGGG- -5'
13035 5' -54.6 NC_003390.1 + 28319 0.66 0.653658
Target:  5'- -gCGCCAUUGGCuGCUaggGCCAGGUUCUg -3'
miRNA:   3'- aaGUGGUAGUCGuUGG---UGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 35123 0.66 0.653658
Target:  5'- --gGCCccCGGCAAuuCCACaGGGCCCCu -3'
miRNA:   3'- aagUGGuaGUCGUU--GGUGgUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 20975 0.66 0.653658
Target:  5'- aUCugCAUCAGCGuuaGCaCGCUguguggAAGCCaCCu -3'
miRNA:   3'- aAGugGUAGUCGU---UG-GUGG------UUCGG-GG- -5'
13035 5' -54.6 NC_003390.1 + 32059 0.66 0.642307
Target:  5'- aUCACCAucaUCAGCAGCU-CUAAGaCUCUc -3'
miRNA:   3'- aAGUGGU---AGUCGUUGGuGGUUC-GGGG- -5'
13035 5' -54.6 NC_003390.1 + 29135 0.66 0.642307
Target:  5'- aUUGCCAgggagUCGGCAAguacCCACCcugcacauGCCCCu -3'
miRNA:   3'- aAGUGGU-----AGUCGUU----GGUGGuu------CGGGG- -5'
13035 5' -54.6 NC_003390.1 + 6851 0.67 0.630946
Target:  5'- cUCAgCAUCuGUAGCCuuGCCugcacGGGCCCUg -3'
miRNA:   3'- aAGUgGUAGuCGUUGG--UGG-----UUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 21525 0.67 0.630946
Target:  5'- --aGCCAUCAGUAGCaUugCAGGCaucgCCa -3'
miRNA:   3'- aagUGGUAGUCGUUG-GugGUUCGg---GG- -5'
13035 5' -54.6 NC_003390.1 + 19242 0.67 0.619586
Target:  5'- --gACCAcCAGCGgaGCCACUcAGCaCCCc -3'
miRNA:   3'- aagUGGUaGUCGU--UGGUGGuUCG-GGG- -5'
13035 5' -54.6 NC_003390.1 + 688 0.67 0.611641
Target:  5'- gUCACCGUugucgaucgacgcCGGCAucccccacagucucaGCUACUggGCUCCa -3'
miRNA:   3'- aAGUGGUA-------------GUCGU---------------UGGUGGuuCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 11126 0.67 0.608238
Target:  5'- cUUCGCUGU-AGCuguacuUCACCAGGCCCUc -3'
miRNA:   3'- -AAGUGGUAgUCGuu----GGUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 45269 0.67 0.598043
Target:  5'- cUUACCAcCAGCuccuccgaagaagaAGCCACCAcuaccugagggguccAGCUCCa -3'
miRNA:   3'- aAGUGGUaGUCG--------------UUGGUGGU---------------UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 27595 0.67 0.598043
Target:  5'- -aCACCGUCcggacuaggguugauGguACCuCCAAGCCCUc -3'
miRNA:   3'- aaGUGGUAGu--------------CguUGGuGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 2208 0.67 0.596912
Target:  5'- --aGCCAugugcUCAGCGAUCACCccuguGGCCUg -3'
miRNA:   3'- aagUGGU-----AGUCGUUGGUGGu----UCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.