miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13040 5' -55.9 NC_003390.1 + 31818 0.66 0.597532
Target:  5'- gAGGgCGAGGcGCUCAGCGGUCUg-- -3'
miRNA:   3'- aUCCgGUUCCaUGGGUUGUCGGGuac -5'
13040 5' -55.9 NC_003390.1 + 34035 0.66 0.597532
Target:  5'- gAGGCCuaGAGGgggGCCCGguccgauuccaGCAGCagaggggggCCAUGg -3'
miRNA:   3'- aUCCGG--UUCCa--UGGGU-----------UGUCG---------GGUAC- -5'
13040 5' -55.9 NC_003390.1 + 47323 0.66 0.575078
Target:  5'- cAGGCCAuAGGuUACaucagCAGCAGCCUgaAUGa -3'
miRNA:   3'- aUCCGGU-UCC-AUGg----GUUGUCGGG--UAC- -5'
13040 5' -55.9 NC_003390.1 + 2593 0.67 0.53083
Target:  5'- aUGGaGCgGA-GUGCCCAGCuGCCCAc- -3'
miRNA:   3'- -AUC-CGgUUcCAUGGGUUGuCGGGUac -5'
13040 5' -55.9 NC_003390.1 + 26161 0.67 0.53083
Target:  5'- gGGGUgu-GGUACCCAGCAGUCa--- -3'
miRNA:   3'- aUCCGguuCCAUGGGUUGUCGGguac -5'
13040 5' -55.9 NC_003390.1 + 7636 0.67 0.519953
Target:  5'- cUGGGCaGAGG-GCCCGAgAGCUCcgGg -3'
miRNA:   3'- -AUCCGgUUCCaUGGGUUgUCGGGuaC- -5'
13040 5' -55.9 NC_003390.1 + 38030 0.67 0.509165
Target:  5'- aGGGUccuCAAGGUaACCCAGguGCUgAUGg -3'
miRNA:   3'- aUCCG---GUUCCA-UGGGUUguCGGgUAC- -5'
13040 5' -55.9 NC_003390.1 + 30758 0.67 0.498472
Target:  5'- gGGGCCGAGGaugGCUgaagCGAgAGCCCuUGg -3'
miRNA:   3'- aUCCGGUUCCa--UGG----GUUgUCGGGuAC- -5'
13040 5' -55.9 NC_003390.1 + 38338 0.67 0.498472
Target:  5'- cUGGGCCuuGGgGgCCAACAGCaCCGUc -3'
miRNA:   3'- -AUCCGGuuCCaUgGGUUGUCG-GGUAc -5'
13040 5' -55.9 NC_003390.1 + 3545 0.68 0.477396
Target:  5'- gUAGGCCAcuacAGGUggcaucaauGCCgAuugGCAGCCCAc- -3'
miRNA:   3'- -AUCCGGU----UCCA---------UGGgU---UGUCGGGUac -5'
13040 5' -55.9 NC_003390.1 + 32605 0.68 0.436632
Target:  5'- -uGGCUAAcGGUgcACCCuuCAGCCCGc- -3'
miRNA:   3'- auCCGGUU-CCA--UGGGuuGUCGGGUac -5'
13040 5' -55.9 NC_003390.1 + 38312 0.69 0.417015
Target:  5'- aAGGCCcucAGGgacuCCCAGgAGCCgAUGg -3'
miRNA:   3'- aUCCGGu--UCCau--GGGUUgUCGGgUAC- -5'
13040 5' -55.9 NC_003390.1 + 38964 0.69 0.387698
Target:  5'- -uGGCCAGGGUuaucuacGCCCAGguaAGCCCc-- -3'
miRNA:   3'- auCCGGUUCCA-------UGGGUUg--UCGGGuac -5'
13040 5' -55.9 NC_003390.1 + 10206 0.71 0.303565
Target:  5'- -uGGCCGGGGUcCUCAAgcaGGCCUAUGg -3'
miRNA:   3'- auCCGGUUCCAuGGGUUg--UCGGGUAC- -5'
13040 5' -55.9 NC_003390.1 + 15602 0.73 0.236085
Target:  5'- aAGGCCAGGGgauaguaaucaauCCCAgccucuugcaGCAGCUCAUGa -3'
miRNA:   3'- aUCCGGUUCCau-----------GGGU----------UGUCGGGUAC- -5'
13040 5' -55.9 NC_003390.1 + 9667 0.74 0.187788
Target:  5'- aGGGUCAAGGUAUCCAACAccGUCC-UGa -3'
miRNA:   3'- aUCCGGUUCCAUGGGUUGU--CGGGuAC- -5'
13040 5' -55.9 NC_003390.1 + 33472 1.07 0.000725
Target:  5'- cUAGGCCAAGGUACCCAACAGCCCAUGg -3'
miRNA:   3'- -AUCCGGUUCCAUGGGUUGUCGGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.