miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13044 3' -53.9 NC_003390.1 + 19085 0.66 0.776201
Target:  5'- cCUGGAAGGCCUUUAccugggcaucGGuGUCaucagggUCCAGGGu -3'
miRNA:   3'- -GGUCUUCCGGGAGU----------UC-CAG-------AGGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 30789 0.66 0.756642
Target:  5'- uCCAG-AGGCCCUaGGGGUaaaacccgcacUgggggCCGAGGa -3'
miRNA:   3'- -GGUCuUCCGGGAgUUCCA-----------Ga----GGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 39560 0.66 0.756642
Target:  5'- ---uAAGGCCUccaCAAGcGUCUCUAAGGc -3'
miRNA:   3'- ggucUUCCGGGa--GUUC-CAGAGGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 27127 0.66 0.751414
Target:  5'- gCGGAgacugGGGCCCUCucugaugagaccguuGAGGccuguccaacauggaCUCCAAGGa -3'
miRNA:   3'- gGUCU-----UCCGGGAG---------------UUCCa--------------GAGGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 34239 0.66 0.746154
Target:  5'- cCCuaacGGGGCUgUCGGGGagcUCUUCGAGGg -3'
miRNA:   3'- -GGuc--UUCCGGgAGUUCC---AGAGGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 27214 0.66 0.746154
Target:  5'- gCCAG-AGGCCUcUGAGGaagCUCCugucGAGGa -3'
miRNA:   3'- -GGUCuUCCGGGaGUUCCa--GAGG----UUCC- -5'
13044 3' -53.9 NC_003390.1 + 1064 0.67 0.724833
Target:  5'- gCAGAAGGCCCcaCAAGGggcCUaCAAGc -3'
miRNA:   3'- gGUCUUCCGGGa-GUUCCa--GAgGUUCc -5'
13044 3' -53.9 NC_003390.1 + 7640 0.67 0.692171
Target:  5'- gCAGAGGGCCC--GAGaG-CUCCGGGu -3'
miRNA:   3'- gGUCUUCCGGGagUUC-CaGAGGUUCc -5'
13044 3' -53.9 NC_003390.1 + 28424 0.67 0.681149
Target:  5'- -gAGAGGGCCucgagagaCUUGAGGUCUCCc--- -3'
miRNA:   3'- ggUCUUCCGG--------GAGUUCCAGAGGuucc -5'
13044 3' -53.9 NC_003390.1 + 37339 0.68 0.658972
Target:  5'- gCAGGAuguGGUCUUUaauuccacuGAGGUCUcCCAAGGg -3'
miRNA:   3'- gGUCUU---CCGGGAG---------UUCCAGA-GGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 27228 0.68 0.658972
Target:  5'- uCCAGGuAGGCcuucucaagcuCCUCAGGaGUCUugaacuugccagCCAGGGg -3'
miRNA:   3'- -GGUCU-UCCG-----------GGAGUUC-CAGA------------GGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 38276 0.68 0.64784
Target:  5'- aCGGAgcccaGGGUCCaCAGGGaaUCCAGGGc -3'
miRNA:   3'- gGUCU-----UCCGGGaGUUCCagAGGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 34337 0.68 0.636694
Target:  5'- aUCAGGcuGGCCCUUGAGGgccgUCCuAGGa -3'
miRNA:   3'- -GGUCUu-CCGGGAGUUCCag--AGGuUCC- -5'
13044 3' -53.9 NC_003390.1 + 37924 0.69 0.614398
Target:  5'- cCCGGGcgaucaAGGUCCcCAAGGUaacCCAGGGc -3'
miRNA:   3'- -GGUCU------UCCGGGaGUUCCAga-GGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 38787 0.69 0.592165
Target:  5'- aCCuGAGGggucacucccgcGCCUUUGAGGggCUCCAAGGc -3'
miRNA:   3'- -GGuCUUC------------CGGGAGUUCCa-GAGGUUCC- -5'
13044 3' -53.9 NC_003390.1 + 38324 0.69 0.570069
Target:  5'- aCCuuGAGGGCCUUCuGGGcCUUgGGGGc -3'
miRNA:   3'- -GGu-CUUCCGGGAGuUCCaGAGgUUCC- -5'
13044 3' -53.9 NC_003390.1 + 28795 0.7 0.537336
Target:  5'- uCCAGAAGGUgggugggCUCGAGGgagCUCCAGa- -3'
miRNA:   3'- -GGUCUUCCGg------GAGUUCCa--GAGGUUcc -5'
13044 3' -53.9 NC_003390.1 + 19348 0.7 0.515876
Target:  5'- aCAGuAGGCCUcUAGGGUCUCCu--- -3'
miRNA:   3'- gGUCuUCCGGGaGUUCCAGAGGuucc -5'
13044 3' -53.9 NC_003390.1 + 38199 0.71 0.474066
Target:  5'- gCAGAcuccacuguuccGGGUCCUCAAGGUCcaaAAGGu -3'
miRNA:   3'- gGUCU------------UCCGGGAGUUCCAGaggUUCC- -5'
13044 3' -53.9 NC_003390.1 + 38242 0.71 0.442865
Target:  5'- gCAGGgucuacaGGGCCCaCAGGGcCUuCCAGGGg -3'
miRNA:   3'- gGUCU-------UCCGGGaGUUCCaGA-GGUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.