Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13095 | 3' | -58.4 | NC_003401.1 | + | 269 | 0.67 | 0.646502 |
Target: 5'- aAGCAGgCCAGCgAGCaagcaggCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- aUCGUCgGGUCG-UCG-------GGAUGA------------UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 361 | 0.7 | 0.445739 |
Target: 5'- ---aAG-CCAGCAGCCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- aucgUCgGGUCGUCGGGAUGA------------UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 389 | 0.84 | 0.060359 |
Target: 5'- aAGCAGgCCagcgAGCAGCCCUACUAGCAa -3' miRNA: 3'- aUCGUCgGG----UCGUCGGGAUGAUCGUc -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 582 | 0.73 | 0.319562 |
Target: 5'- uUAGCaAGCa-AGCAGCCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- -AUCG-UCGggUCGUCGGGAUGA------------UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 629 | 0.79 | 0.125656 |
Target: 5'- ----nGCCCAGCAGCCCUACUaucaagccaucaGGCAGg -3' miRNA: 3'- aucguCGGGUCGUCGGGAUGA------------UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 654 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 694 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 734 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 774 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 814 | 1.06 | 0.001673 |
Target: 5'- cUAGCAGCCCAGCAGCCCUACUAGCAGc -3' miRNA: 3'- -AUCGUCGGGUCGUCGGGAUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 889 | 0.81 | 0.093512 |
Target: 5'- cAGCuGCaCAGCAGCCCUAgUAGCAGg -3' miRNA: 3'- aUCGuCGgGUCGUCGGGAUgAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 921 | 0.71 | 0.418307 |
Target: 5'- -cGCAGCuggCCGGCAGCCCUACUc---- -3' miRNA: 3'- auCGUCG---GGUCGUCGGGAUGAucguc -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 1057 | 0.73 | 0.304187 |
Target: 5'- uUAGCAacaaaCCAGCAGCCCUACUguuuuucAGCAa -3' miRNA: 3'- -AUCGUcg---GGUCGUCGGGAUGA-------UCGUc -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 9364 | 0.69 | 0.52339 |
Target: 5'- --cUAGCgCCGGC-GCCCUACUGGcCGGg -3' miRNA: 3'- aucGUCG-GGUCGuCGGGAUGAUC-GUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 19597 | 0.66 | 0.689205 |
Target: 5'- -cGCGGUUCGGUGGCCCggcgaaACUgcGGCAGc -3' miRNA: 3'- auCGUCGGGUCGUCGGGa-----UGA--UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 23697 | 0.66 | 0.719959 |
Target: 5'- aUGGCGGaCCGGCAGCgCCgguuggACgcGGCGGa -3' miRNA: 3'- -AUCGUCgGGUCGUCG-GGa-----UGa-UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 69191 | 0.7 | 0.464575 |
Target: 5'- gGGguGCCgGGagaAGCCCcgguucgcaUACUGGCAGg -3' miRNA: 3'- aUCguCGGgUCg--UCGGG---------AUGAUCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 72640 | 0.66 | 0.678842 |
Target: 5'- gGGCGGCCaCGGCcaaGGCCgUgacGCgcgGGCAGa -3' miRNA: 3'- aUCGUCGG-GUCG---UCGGgA---UGa--UCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 79586 | 0.69 | 0.553863 |
Target: 5'- aAGCGGCCCGGgAGCCau----GCAGa -3' miRNA: 3'- aUCGUCGGGUCgUCGGgaugauCGUC- -5' |
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13095 | 3' | -58.4 | NC_003401.1 | + | 88984 | 0.68 | 0.595248 |
Target: 5'- cAGCAGCuauuuucaucuCUAGCGcCgCCUACUAGCGGa -3' miRNA: 3'- aUCGUCG-----------GGUCGUcG-GGAUGAUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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