Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13099 | 5' | -62.7 | NC_003401.1 | + | 119778 | 0.67 | 0.557747 |
Target: 5'- cGACgGCCUCcgccaaucugGCCGgAGGCGGCGCagcggcaCCg -3' miRNA: 3'- -CUG-CGGAG----------CGGCaUCCGCUGCGgg-----GG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 118655 | 0.68 | 0.482801 |
Target: 5'- uGAgGUgUCGCCgGUGGGcCGuAUGaCCCCCg -3' miRNA: 3'- -CUgCGgAGCGG-CAUCC-GC-UGC-GGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 132252 | 0.68 | 0.482801 |
Target: 5'- -cCGCCaucuugCGCCcgGGGCGagggucccccgcGCGCCCCCc -3' miRNA: 3'- cuGCGGa-----GCGGcaUCCGC------------UGCGGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 132681 | 0.68 | 0.497433 |
Target: 5'- gGGCGCCUCGgCGgggcccggcgcggGGcGCGACcgaggGCCCCg -3' miRNA: 3'- -CUGCGGAGCgGCa------------UC-CGCUG-----CGGGGg -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 21231 | 0.68 | 0.501122 |
Target: 5'- uGAC-CCUCGuaGUuGGCGuCGgCCCCCc -3' miRNA: 3'- -CUGcGGAGCggCAuCCGCuGC-GGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 13001 | 0.67 | 0.519744 |
Target: 5'- --gGCCaaGuUCGUGGGCGACGCCaucuCCg -3' miRNA: 3'- cugCGGagC-GGCAUCCGCUGCGGg---GG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 89672 | 0.67 | 0.529156 |
Target: 5'- --aGCCUcCGCCGgagcgggaggAGGCaggGGCGUCCCUg -3' miRNA: 3'- cugCGGA-GCGGCa---------UCCG---CUGCGGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 87879 | 0.67 | 0.53768 |
Target: 5'- cACGgCUCGCCuuccggaGUGGGa-ACGCCUCCu -3' miRNA: 3'- cUGCgGAGCGG-------CAUCCgcUGCGGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 127829 | 0.67 | 0.548163 |
Target: 5'- -uCGCCUCGCUGguGGUGGCGCUgUg -3' miRNA: 3'- cuGCGGAGCGGCauCCGCUGCGGgGg -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 17495 | 0.68 | 0.464809 |
Target: 5'- cGACGCggaCG-CGgcGcGCGugGCCCCCg -3' miRNA: 3'- -CUGCGga-GCgGCauC-CGCugCGGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 82259 | 0.68 | 0.455944 |
Target: 5'- -cCGcCCUCgGgUGUAGGU-ACGCCCCCa -3' miRNA: 3'- cuGC-GGAG-CgGCAUCCGcUGCGGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 23637 | 0.69 | 0.447172 |
Target: 5'- gGGCGCCgcgagCgGCCGgcAGGUGGCGCcgcgcuuucCCCCa -3' miRNA: 3'- -CUGCGGa----G-CGGCa-UCCGCUGCG---------GGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 94584 | 0.71 | 0.314019 |
Target: 5'- cGCGCCUaaCGCUcucgGUAGGCGcCGUCCCg -3' miRNA: 3'- cUGCGGA--GCGG----CAUCCGCuGCGGGGg -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 6280 | 0.71 | 0.328018 |
Target: 5'- cGACG-CUCGCCGUuaAGGUGACGUgCUUu -3' miRNA: 3'- -CUGCgGAGCGGCA--UCCGCUGCGgGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 88259 | 0.7 | 0.369634 |
Target: 5'- uGGCGCCggcaacaggcgaaCGCCGuUGGGCGACccgaCCUCCa -3' miRNA: 3'- -CUGCGGa------------GCGGC-AUCCGCUGc---GGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 36964 | 0.69 | 0.403133 |
Target: 5'- aGACGUaCUCGCCGUuGGauagcugcacCGCCCCCc -3' miRNA: 3'- -CUGCG-GAGCGGCAuCCgcu-------GCGGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 118727 | 0.69 | 0.404776 |
Target: 5'- --gGCCgCGCCGcuuGGCGGCGCggcuuccucCCCCa -3' miRNA: 3'- cugCGGaGCGGCau-CCGCUGCG---------GGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 132341 | 0.69 | 0.421432 |
Target: 5'- -cCGCCcCGCCGgcccGGGCccgcggccGcCGCCCCCg -3' miRNA: 3'- cuGCGGaGCGGCa---UCCG--------CuGCGGGGG- -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 111917 | 0.69 | 0.426508 |
Target: 5'- uGGCGUCUcgagCGCCGUacgcaccuagcgucAGGCGACcggacggGCCCCa -3' miRNA: 3'- -CUGCGGA----GCGGCA--------------UCCGCUG-------CGGGGg -5' |
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13099 | 5' | -62.7 | NC_003401.1 | + | 10889 | 0.69 | 0.445428 |
Target: 5'- cGGCGCUUCGUCGcgcuucccugggAGGCG-CGCUgCCg -3' miRNA: 3'- -CUGCGGAGCGGCa-----------UCCGCuGCGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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