miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13110 3' -56.9 NC_003401.1 + 96192 0.66 0.859666
Target:  5'- -cACCGAAACUUcuuuCUCUGCGGCa- -3'
miRNA:   3'- gaUGGCUUUGGGcac-GAGACGCCGgu -5'
13110 3' -56.9 NC_003401.1 + 20289 0.66 0.851857
Target:  5'- gCUGCUGGAcgacgcGCCCGgggacGCggacgCcGCGGCCAu -3'
miRNA:   3'- -GAUGGCUU------UGGGCa----CGa----GaCGCCGGU- -5'
13110 3' -56.9 NC_003401.1 + 23792 0.66 0.851857
Target:  5'- cCUGCCGGccgcucgcggcGCCCGUGUUuuuggcCUGCuGCCAg -3'
miRNA:   3'- -GAUGGCUu----------UGGGCACGA------GACGcCGGU- -5'
13110 3' -56.9 NC_003401.1 + 132347 0.66 0.843846
Target:  5'- -cGCCG--GCCCGgGC-CcGCGGCCGc -3'
miRNA:   3'- gaUGGCuuUGGGCaCGaGaCGCCGGU- -5'
13110 3' -56.9 NC_003401.1 + 16860 0.66 0.838946
Target:  5'- -aGCCGGcAGCCCcuccucguauaccgcGUGCg--GCGGCCGc -3'
miRNA:   3'- gaUGGCU-UUGGG---------------CACGagaCGCCGGU- -5'
13110 3' -56.9 NC_003401.1 + 104666 0.66 0.8264
Target:  5'- -aACCGAAaacguuccggcgcGCCCGgcgaugGaCUCgGUGGCCAg -3'
miRNA:   3'- gaUGGCUU-------------UGGGCa-----C-GAGaCGCCGGU- -5'
13110 3' -56.9 NC_003401.1 + 132669 0.66 0.818677
Target:  5'- -gGCCGggGCCCGgggcGCcUCggcGgGGCCc -3'
miRNA:   3'- gaUGGCuuUGGGCa---CG-AGa--CgCCGGu -5'
13110 3' -56.9 NC_003401.1 + 10452 0.66 0.818677
Target:  5'- -gACCGGAucccauagaAUCCcUGUUCUGCGGCg- -3'
miRNA:   3'- gaUGGCUU---------UGGGcACGAGACGCCGgu -5'
13110 3' -56.9 NC_003401.1 + 111528 0.68 0.763951
Target:  5'- -gACCGGcgUCCG-GgUgUGCGGCCAg -3'
miRNA:   3'- gaUGGCUuuGGGCaCgAgACGCCGGU- -5'
13110 3' -56.9 NC_003401.1 + 107728 0.68 0.744666
Target:  5'- -cACCGggGCaac-GCUCgggGCGGCCGa -3'
miRNA:   3'- gaUGGCuuUGggcaCGAGa--CGCCGGU- -5'
13110 3' -56.9 NC_003401.1 + 52451 0.68 0.715015
Target:  5'- -gACUGGAcCgCCGUGCUCggacGCGGCUc -3'
miRNA:   3'- gaUGGCUUuG-GGCACGAGa---CGCCGGu -5'
13110 3' -56.9 NC_003401.1 + 132545 0.69 0.704977
Target:  5'- -aACCGAAagcgGCCCGgcgcGCggcgCgggGCGGCCGg -3'
miRNA:   3'- gaUGGCUU----UGGGCa---CGa---Ga--CGCCGGU- -5'
13110 3' -56.9 NC_003401.1 + 91389 0.7 0.633468
Target:  5'- gCUACCG--GCCUG-GCUCUcGCGGCa- -3'
miRNA:   3'- -GAUGGCuuUGGGCaCGAGA-CGCCGgu -5'
13110 3' -56.9 NC_003401.1 + 78289 0.7 0.623181
Target:  5'- uCUG-CGGGACUCGagGCUCUcGCGGCCu -3'
miRNA:   3'- -GAUgGCUUUGGGCa-CGAGA-CGCCGGu -5'
13110 3' -56.9 NC_003401.1 + 124419 0.71 0.551778
Target:  5'- -aGCCGGAGgcCCCGUGCUUgacccacggGCGGCgGg -3'
miRNA:   3'- gaUGGCUUU--GGGCACGAGa--------CGCCGgU- -5'
13110 3' -56.9 NC_003401.1 + 23726 1.08 0.002134
Target:  5'- aCUACCGAAACCCGUGCUCUGCGGCCAc -3'
miRNA:   3'- -GAUGGCUUUGGGCACGAGACGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.