miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13131 5' -56 NC_003401.1 + 15946 0.66 0.880617
Target:  5'- gCCCUGaua--GCCCCCcugucccucgGGCGUUGGa -3'
miRNA:   3'- aGGGACcauagCGGGGGa---------UCGCAAUC- -5'
13131 5' -56 NC_003401.1 + 3208 0.66 0.86591
Target:  5'- aUCCCUGaaaagaagCGCCCUCUGGUGa--- -3'
miRNA:   3'- -AGGGACcaua----GCGGGGGAUCGCaauc -5'
13131 5' -56 NC_003401.1 + 17501 0.66 0.86591
Target:  5'- aCCCUGGcGUaGCCCCCgUGGCc---- -3'
miRNA:   3'- aGGGACCaUAgCGGGGG-AUCGcaauc -5'
13131 5' -56 NC_003401.1 + 76793 0.66 0.858232
Target:  5'- aCCUUauagcagugaGGUAcgcgcacgcaUCGCCCCUUGGCGUa-- -3'
miRNA:   3'- aGGGA----------CCAU----------AGCGGGGGAUCGCAauc -5'
13131 5' -56 NC_003401.1 + 119990 0.67 0.825501
Target:  5'- gUCCCUGGUGgcgGCCgCCUGcGCGcuguUUAGc -3'
miRNA:   3'- -AGGGACCAUag-CGGgGGAU-CGC----AAUC- -5'
13131 5' -56 NC_003401.1 + 93100 0.69 0.721396
Target:  5'- gCCCUGGUGuguagcagcUCGUCCCUggagaugUAGuCGUUAGc -3'
miRNA:   3'- aGGGACCAU---------AGCGGGGG-------AUC-GCAAUC- -5'
13131 5' -56 NC_003401.1 + 108318 0.7 0.670582
Target:  5'- cUCCCUGGUuagcgucGUCGUgCCCUguuuGGCGUc-- -3'
miRNA:   3'- -AGGGACCA-------UAGCGgGGGA----UCGCAauc -5'
13131 5' -56 NC_003401.1 + 71816 0.7 0.651001
Target:  5'- aCCCUGGaacgcgCGCCCCCacGCGUUc- -3'
miRNA:   3'- aGGGACCaua---GCGGGGGauCGCAAuc -5'
13131 5' -56 NC_003401.1 + 62900 0.71 0.58907
Target:  5'- cUCCCUGGUcgUGCaggaCUCUAGCGg--- -3'
miRNA:   3'- -AGGGACCAuaGCGg---GGGAUCGCaauc -5'
13131 5' -56 NC_003401.1 + 62152 1.1 0.002232
Target:  5'- gUCCCUGGUAUCGCCCCCUAGCGUUAGa -3'
miRNA:   3'- -AGGGACCAUAGCGGGGGAUCGCAAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.