miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13171 5' -64.6 NC_003401.1 + 30513 0.66 0.493903
Target:  5'- -cGCCCCaccGGCGCCUcaaccUGGCCucGCuCCUg -3'
miRNA:   3'- caUGGGGgc-CCGUGGA-----ACCGG--CG-GGA- -5'
13171 5' -64.6 NC_003401.1 + 74488 0.66 0.48474
Target:  5'- -cACCCCgCGGGUACCcuaGCCGCgUCa -3'
miRNA:   3'- caUGGGG-GCCCGUGGaacCGGCG-GGa -5'
13171 5' -64.6 NC_003401.1 + 118848 0.66 0.457756
Target:  5'- --uCCCCCGuGCGCauc-GCCGCCCUc -3'
miRNA:   3'- cauGGGGGCcCGUGgaacCGGCGGGA- -5'
13171 5' -64.6 NC_003401.1 + 125905 0.66 0.457756
Target:  5'- -cGCCgUCGaGGcCGCCagcagUGGCCGCCUUg -3'
miRNA:   3'- caUGGgGGC-CC-GUGGa----ACCGGCGGGA- -5'
13171 5' -64.6 NC_003401.1 + 125225 0.66 0.448941
Target:  5'- -cACCggaCGGGCGCCaccUGGCCuCCCUg -3'
miRNA:   3'- caUGGgg-GCCCGUGGa--ACCGGcGGGA- -5'
13171 5' -64.6 NC_003401.1 + 118021 0.66 0.448941
Target:  5'- cGUACCCaUCGgccgcucuuuGGCGCCggGGUCGUCCg -3'
miRNA:   3'- -CAUGGG-GGC----------CCGUGGaaCCGGCGGGa -5'
13171 5' -64.6 NC_003401.1 + 120554 0.66 0.448941
Target:  5'- aGUGCCCaCCGGG-ACCaUUGaccCCGUCCUg -3'
miRNA:   3'- -CAUGGG-GGCCCgUGG-AACc--GGCGGGA- -5'
13171 5' -64.6 NC_003401.1 + 133380 0.67 0.406332
Target:  5'- -gGCUgCUGGGCugCUaguagGGCUGCCUg -3'
miRNA:   3'- caUGGgGGCCCGugGAa----CCGGCGGGa -5'
13171 5' -64.6 NC_003401.1 + 665 0.67 0.406332
Target:  5'- -gGCUgCUGGGCugCUaguagGGCUGCCUg -3'
miRNA:   3'- caUGGgGGCCCGugGAa----CCGGCGGGa -5'
13171 5' -64.6 NC_003401.1 + 15055 0.67 0.39812
Target:  5'- -gGCCgUCCuGGCAUCUcUGGCCGCCa- -3'
miRNA:   3'- caUGG-GGGcCCGUGGA-ACCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 48923 0.68 0.382017
Target:  5'- gGUGCUCCCGGGgGgCUUuguuauuaaaGGCCGCUa- -3'
miRNA:   3'- -CAUGGGGGCCCgUgGAA----------CCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 118120 0.68 0.374131
Target:  5'- ---aCCCCGGGCGgCaaaaGCCGCCCc -3'
miRNA:   3'- caugGGGGCCCGUgGaac-CGGCGGGa -5'
13171 5' -64.6 NC_003401.1 + 132531 0.68 0.358692
Target:  5'- --cCCCCCGGGC-CCggGGCC-CCa- -3'
miRNA:   3'- cauGGGGGCCCGuGGaaCCGGcGGga -5'
13171 5' -64.6 NC_003401.1 + 132819 0.68 0.358692
Target:  5'- -gGCgCCCCGGGC-CCc-GGCCcCCCUc -3'
miRNA:   3'- caUG-GGGGCCCGuGGaaCCGGcGGGA- -5'
13171 5' -64.6 NC_003401.1 + 565 0.68 0.358692
Target:  5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3'
miRNA:   3'- caUGGGGGCCCGugGAa----CCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 133320 0.68 0.358692
Target:  5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3'
miRNA:   3'- caUGGGGGCCCGugGAa----CCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 605 0.68 0.358692
Target:  5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3'
miRNA:   3'- caUGGGGGCCCGugGAa----CCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 133280 0.68 0.358692
Target:  5'- -gGCUCCUGGGCugCUaguagGGCUGCUg- -3'
miRNA:   3'- caUGGGGGCCCGugGAa----CCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 21101 0.68 0.358692
Target:  5'- ---aCCCCGGGagacuuugugcaCACCUUGGgugaCGCCCa -3'
miRNA:   3'- caugGGGGCCC------------GUGGAACCg---GCGGGa -5'
13171 5' -64.6 NC_003401.1 + 118609 0.68 0.351141
Target:  5'- -gACCCCgCGaucGCACCuUUGGCCGgCCg -3'
miRNA:   3'- caUGGGG-GCc--CGUGG-AACCGGCgGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.