miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13171 5' -64.6 NC_003401.1 + 118609 0.68 0.351141
Target:  5'- -gACCCCgCGaucGCACCuUUGGCCGgCCg -3'
miRNA:   3'- caUGGGG-GCc--CGUGG-AACCGGCgGGa -5'
13171 5' -64.6 NC_003401.1 + 118349 0.68 0.351141
Target:  5'- -cGCCCgCGGuGCcgccGCCggGGUCGCCCg -3'
miRNA:   3'- caUGGGgGCC-CG----UGGaaCCGGCGGGa -5'
13171 5' -64.6 NC_003401.1 + 72473 0.69 0.336381
Target:  5'- cUGCCCgCGcgucacGGCcuugGCCgUGGCCGCCCUc -3'
miRNA:   3'- cAUGGGgGC------CCG----UGGaACCGGCGGGA- -5'
13171 5' -64.6 NC_003401.1 + 132674 0.69 0.315099
Target:  5'- -gGgCCCgGGGCGCCUcGGCgggGCCCg -3'
miRNA:   3'- caUgGGGgCCCGUGGAaCCGg--CGGGa -5'
13171 5' -64.6 NC_003401.1 + 132356 0.69 0.301486
Target:  5'- -cGCCUCCGGGC-CC--GGCCGCUa- -3'
miRNA:   3'- caUGGGGGCCCGuGGaaCCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 118285 0.69 0.294851
Target:  5'- gGUGCCCaUgGGGCgGCUUUuGCCGCCCg -3'
miRNA:   3'- -CAUGGG-GgCCCG-UGGAAcCGGCGGGa -5'
13171 5' -64.6 NC_003401.1 + 132289 0.7 0.281923
Target:  5'- --cCCCCCGGGCccgcgcGCCggGcGCCGCCg- -3'
miRNA:   3'- cauGGGGGCCCG------UGGaaC-CGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 132370 0.7 0.281289
Target:  5'- -cGCCCCCGGccgccccGCGCCgcgcgccgGGCCGCUUUc -3'
miRNA:   3'- caUGGGGGCC-------CGUGGaa------CCGGCGGGA- -5'
13171 5' -64.6 NC_003401.1 + 79734 0.7 0.27563
Target:  5'- -gGCUCCCGGGcCGCUUcaguugUGGuuGCCCc -3'
miRNA:   3'- caUGGGGGCCC-GUGGA------ACCggCGGGa -5'
13171 5' -64.6 NC_003401.1 + 64378 0.71 0.251578
Target:  5'- gGUACCgCCCGGGUACggaGGCCcCCCa -3'
miRNA:   3'- -CAUGG-GGGCCCGUGgaaCCGGcGGGa -5'
13171 5' -64.6 NC_003401.1 + 132347 0.71 0.251578
Target:  5'- -cGCCggCCCGGGC-CCgcGGCCGCCg- -3'
miRNA:   3'- caUGG--GGGCCCGuGGaaCCGGCGGga -5'
13171 5' -64.6 NC_003401.1 + 132735 0.71 0.229282
Target:  5'- -cGCCaugCCGGGCGC---GGCCGCCCg -3'
miRNA:   3'- caUGGg--GGCCCGUGgaaCCGGCGGGa -5'
13171 5' -64.6 NC_003401.1 + 80160 0.72 0.194292
Target:  5'- -cACCCaauaGGcGCGCCUUGGCCugGCCCa -3'
miRNA:   3'- caUGGGgg--CC-CGUGGAACCGG--CGGGa -5'
13171 5' -64.6 NC_003401.1 + 132446 0.73 0.164064
Target:  5'- -cGCCCCCGGGUGCCgcuccGCCggGCCCg -3'
miRNA:   3'- caUGGGGGCCCGUGGaac--CGG--CGGGa -5'
13171 5' -64.6 NC_003401.1 + 125864 0.76 0.11601
Target:  5'- gGUGCCCCgcuucccaGGGCGCUgaUGGCCGCCUUc -3'
miRNA:   3'- -CAUGGGGg-------CCCGUGGa-ACCGGCGGGA- -5'
13171 5' -64.6 NC_003401.1 + 128527 1.07 0.000575
Target:  5'- gGUACCCCCGGGCACCUUGGCCGCCCUg -3'
miRNA:   3'- -CAUGGGGGCCCGUGGAACCGGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.