miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13210 3' -49 NC_003401.1 + 51060 0.66 0.997417
Target:  5'- cGUuCUGCcggaauCGCGCCCGGUUaGAGAcuguccGCa -3'
miRNA:   3'- -CAuGAUGau----GUGCGGGCCAA-CUUU------CG- -5'
13210 3' -49 NC_003401.1 + 44887 0.66 0.997417
Target:  5'- -cACUAUggGCugGCCCuGUU-AAAGCg -3'
miRNA:   3'- caUGAUGa-UGugCGGGcCAAcUUUCG- -5'
13210 3' -49 NC_003401.1 + 64383 0.66 0.996367
Target:  5'- uUGCcGgUAC-CGCCCGGguacGGAGGCc -3'
miRNA:   3'- cAUGaUgAUGuGCGGGCCaa--CUUUCG- -5'
13210 3' -49 NC_003401.1 + 105996 0.66 0.996367
Target:  5'- aUGCcGCcGCGCGCCUGGcc-AAGGCg -3'
miRNA:   3'- cAUGaUGaUGUGCGGGCCaacUUUCG- -5'
13210 3' -49 NC_003401.1 + 48126 0.67 0.993213
Target:  5'- -cACUGCUACGCGaCCCGuGUccgcguGCa -3'
miRNA:   3'- caUGAUGAUGUGC-GGGC-CAacuuu-CG- -5'
13210 3' -49 NC_003401.1 + 22856 0.68 0.990966
Target:  5'- cGUGCgucaggugGCUAacCACGCCUGGUUuccgucGAGGCg -3'
miRNA:   3'- -CAUGa-------UGAU--GUGCGGGCCAAc-----UUUCG- -5'
13210 3' -49 NC_003401.1 + 53087 0.68 0.989642
Target:  5'- gGUACgugUGCUGCACGaaCCCGaGuUUGGAGGUc -3'
miRNA:   3'- -CAUG---AUGAUGUGC--GGGC-C-AACUUUCG- -5'
13210 3' -49 NC_003401.1 + 120778 0.68 0.988171
Target:  5'- -cACUA-UGCugGCCUGGaagugGggGGCg -3'
miRNA:   3'- caUGAUgAUGugCGGGCCaa---CuuUCG- -5'
13210 3' -49 NC_003401.1 + 54742 0.69 0.982778
Target:  5'- -aGCUGCUGCACGaUCGGU-GAAuuuGCc -3'
miRNA:   3'- caUGAUGAUGUGCgGGCCAaCUUu--CG- -5'
13210 3' -49 NC_003401.1 + 108304 0.7 0.96537
Target:  5'- -aGCaauaUACGCGCCCGGUgguagcacagaucGAAAGCu -3'
miRNA:   3'- caUGaug-AUGUGCGGGCCAa------------CUUUCG- -5'
13210 3' -49 NC_003401.1 + 76647 0.73 0.894811
Target:  5'- -cACUGCUAuaaggUugGCCCGGggGGcGAGCu -3'
miRNA:   3'- caUGAUGAU-----GugCGGGCCaaCU-UUCG- -5'
13210 3' -49 NC_003401.1 + 20291 0.73 0.872717
Target:  5'- aUGCUGCUggacgACGCGCCCGG--GGAcGCg -3'
miRNA:   3'- cAUGAUGA-----UGUGCGGGCCaaCUUuCG- -5'
13210 3' -49 NC_003401.1 + 62649 0.82 0.46939
Target:  5'- -----uCUACACGCCCGGUUGccAGAGCg -3'
miRNA:   3'- caugauGAUGUGCGGGCCAAC--UUUCG- -5'
13210 3' -49 NC_003401.1 + 32494 1.14 0.005645
Target:  5'- cGUACUACUACACGCCCGGUUGAAAGCg -3'
miRNA:   3'- -CAUGAUGAUGUGCGGGCCAACUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.