miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 3' -56.1 NC_003409.1 + 56145 0.69 0.712371
Target:  5'- uGGGGGCAGUgcacgcaCCAGGau-CCAGAcUGg -3'
miRNA:   3'- -CCCCCGUCGa------GGUCCgcuGGUUUuAC- -5'
13277 3' -56.1 NC_003409.1 + 84580 0.7 0.68185
Target:  5'- cGGGGCAGUgcuugCCAGGCGAg------- -3'
miRNA:   3'- cCCCCGUCGa----GGUCCGCUgguuuuac -5'
13277 3' -56.1 NC_003409.1 + 84023 0.7 0.68185
Target:  5'- uGGGGCAGCaagAGGgGGCCGGAGUc -3'
miRNA:   3'- cCCCCGUCGaggUCCgCUGGUUUUAc -5'
13277 3' -56.1 NC_003409.1 + 80673 0.7 0.661277
Target:  5'- uGGGaGCAaaGUgugauauuUCCAGGCGACCAGGAc- -3'
miRNA:   3'- cCCC-CGU--CG--------AGGUCCGCUGGUUUUac -5'
13277 3' -56.1 NC_003409.1 + 128612 0.7 0.650951
Target:  5'- aGGGuGCGGC-CCAGGUGACauuggGGGGUGg -3'
miRNA:   3'- cCCC-CGUCGaGGUCCGCUGg----UUUUAC- -5'
13277 3' -56.1 NC_003409.1 + 115364 0.7 0.640608
Target:  5'- cGGGGCAuGCUCaCAGGC-ACCAu---- -3'
miRNA:   3'- cCCCCGU-CGAG-GUCCGcUGGUuuuac -5'
13277 3' -56.1 NC_003409.1 + 22610 0.71 0.588959
Target:  5'- uGGGGCuGCUCUucuGGGUGGCCGuGAUu -3'
miRNA:   3'- cCCCCGuCGAGG---UCCGCUGGUuUUAc -5'
13277 3' -56.1 NC_003409.1 + 82250 0.72 0.548165
Target:  5'- gGGGGGaUGGUccgCCGGGCGACgAAGAUa -3'
miRNA:   3'- -CCCCC-GUCGa--GGUCCGCUGgUUUUAc -5'
13277 3' -56.1 NC_003409.1 + 96858 0.74 0.45936
Target:  5'- aGGGGGCAcGCUUCuGGCGgaggcguGCCAAAuAUGg -3'
miRNA:   3'- -CCCCCGU-CGAGGuCCGC-------UGGUUU-UAC- -5'
13277 3' -56.1 NC_003409.1 + 47610 0.75 0.40604
Target:  5'- aGGGGGUGGUgCCagaugAGGUGACCAGGAUa -3'
miRNA:   3'- -CCCCCGUCGaGG-----UCCGCUGGUUUUAc -5'
13277 3' -56.1 NC_003409.1 + 19141 1.11 0.001583
Target:  5'- cGGGGGCAGCUCCAGGCGACCAAAAUGg -3'
miRNA:   3'- -CCCCCGUCGAGGUCCGCUGGUUUUAC- -5'
13277 3' -56.1 NC_003409.1 + 19108 1.12 0.001539
Target:  5'- cGGGGGCAGCUCCAGGCGACCAAGAUGg -3'
miRNA:   3'- -CCCCCGUCGAGGUCCGCUGGUUUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.