miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 19105 1.12 0.001082
Target:  5'- gGGCAGCUCCAGGCGACCAAGAUGGCCc -3'
miRNA:   3'- -CCGUCGAGGUCCGCUGGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 19138 1.02 0.006042
Target:  5'- gGGCAGCUCCAGGCGACCAAaAUGGCCc -3'
miRNA:   3'- -CCGUCGAGGUCCGCUGGUUcUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 10374 0.76 0.302049
Target:  5'- uGGCGGauaCAGGuCGACCGuAGAUGGCUg -3'
miRNA:   3'- -CCGUCgagGUCC-GCUGGU-UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 22582 0.75 0.330929
Target:  5'- --aAGC-CCAGGCGACCAGGGgucGCCg -3'
miRNA:   3'- ccgUCGaGGUCCGCUGGUUCUac-CGG- -5'
13277 5' -57.4 NC_003409.1 + 73931 0.75 0.323523
Target:  5'- gGGCgaagAGCuUCCGGGCggucaugacggaGACCAAGGUGuGCCg -3'
miRNA:   3'- -CCG----UCG-AGGUCCG------------CUGGUUCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 131706 0.75 0.353892
Target:  5'- aGguGCUgCGGGCGGCCAGGGacuaccgcugcgUGGCa -3'
miRNA:   3'- cCguCGAgGUCCGCUGGUUCU------------ACCGg -5'
13277 5' -57.4 NC_003409.1 + 107973 0.74 0.411709
Target:  5'- aGGgAGCUCCagGGGCGugcCCAccGUGGCCu -3'
miRNA:   3'- -CCgUCGAGG--UCCGCu--GGUucUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 45901 0.74 0.411709
Target:  5'- uGGC-GCUaauGGCGcCCGGGGUGGCCu -3'
miRNA:   3'- -CCGuCGAgguCCGCuGGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 80673 0.74 0.377137
Target:  5'- uGGgAGCaaagugugauauuUCCAGGCGACCAGGAcUGGg- -3'
miRNA:   3'- -CCgUCG-------------AGGUCCGCUGGUUCU-ACCgg -5'
13277 5' -57.4 NC_003409.1 + 33488 0.72 0.503614
Target:  5'- uGGCGcuGCUCCAGGCGAgaacagcccuCCGccuggcaacagaAGAgGGCCu -3'
miRNA:   3'- -CCGU--CGAGGUCCGCU----------GGU------------UCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 128608 0.72 0.51331
Target:  5'- uGCGGC-CCAGGUGACauuggGGGGUGGgCg -3'
miRNA:   3'- cCGUCGaGGUCCGCUGg----UUCUACCgG- -5'
13277 5' -57.4 NC_003409.1 + 22608 0.71 0.572895
Target:  5'- gGGCuGCUCUucuGGGUGGCCGuGAUugagcuaugugcGGCCa -3'
miRNA:   3'- -CCGuCGAGG---UCCGCUGGUuCUA------------CCGG- -5'
13277 5' -57.4 NC_003409.1 + 19652 0.71 0.552802
Target:  5'- gGGCAcGCgUCCAGGCaACCGGGGucccccucguUGGUCu -3'
miRNA:   3'- -CCGU-CG-AGGUCCGcUGGUUCU----------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 68832 0.71 0.551803
Target:  5'- uGGCcuCUCUuGGUGGCCGAcacucgcGAUGGCCu -3'
miRNA:   3'- -CCGucGAGGuCCGCUGGUU-------CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 6394 0.71 0.542834
Target:  5'- aGGCGGgggugCCAuGGaCGGCCGAGGgugUGGCCu -3'
miRNA:   3'- -CCGUCga---GGU-CC-GCUGGUUCU---ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 56073 0.7 0.619655
Target:  5'- uGGCAGCUgaaucagcauauaCAGGUGuCCAAGAcuaaaaaGGCCa -3'
miRNA:   3'- -CCGUCGAg------------GUCCGCuGGUUCUa------CCGG- -5'
13277 5' -57.4 NC_003409.1 + 13545 0.7 0.633958
Target:  5'- cGGC-GUUgCAGGUaACCuuGAUGGCCa -3'
miRNA:   3'- -CCGuCGAgGUCCGcUGGuuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 52584 0.69 0.664571
Target:  5'- aGCAGg-CguGGCGGCCAAGG-GGCg -3'
miRNA:   3'- cCGUCgaGguCCGCUGGUUCUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 37901 0.69 0.684862
Target:  5'- uGGCAGUgaaUCCGGGaGACCGaacagaAGAUGggacGCCg -3'
miRNA:   3'- -CCGUCG---AGGUCCgCUGGU------UCUAC----CGG- -5'
13277 5' -57.4 NC_003409.1 + 119959 0.69 0.644175
Target:  5'- cGCGGCgcccacgCCGGcgccuggcacGCGGCCAacauaaaguguGGAUGGCCc -3'
miRNA:   3'- cCGUCGa------GGUC----------CGCUGGU-----------UCUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.