miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 5' -54.6 NC_003409.1 + 87449 0.66 0.946284
Target:  5'- uGGcACCCAccAGUUggUCAcGCCgUGGUGCCg -3'
miRNA:   3'- cCC-UGGGU--UUAA--AGU-CGG-GCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 56035 0.66 0.946284
Target:  5'- aGGcuACCCGGAUUUCAGagagacCCUGGgcGUCCa -3'
miRNA:   3'- cCC--UGGGUUUAAAGUC------GGGCCa-CGGG- -5'
13289 5' -54.6 NC_003409.1 + 21087 0.66 0.941751
Target:  5'- -aGAUCCuggAAGUUUgugaAGCCCuGUGCCCg -3'
miRNA:   3'- ccCUGGG---UUUAAAg---UCGGGcCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 93821 0.66 0.946284
Target:  5'- cGGGAUUUcuGg--CAGCCCG-UGCCUa -3'
miRNA:   3'- -CCCUGGGuuUaaaGUCGGGCcACGGG- -5'
13289 5' -54.6 NC_003409.1 + 55162 0.66 0.946284
Target:  5'- cGGuuACCCG------GGCCCGGUGCUa -3'
miRNA:   3'- cCC--UGGGUuuaaagUCGGGCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 87693 0.66 0.926165
Target:  5'- aGGGAuugcuccCCCAAAg--CGGCCaauGUGCUCg -3'
miRNA:   3'- -CCCU-------GGGUUUaaaGUCGGgc-CACGGG- -5'
13289 5' -54.6 NC_003409.1 + 114430 0.66 0.936978
Target:  5'- cGGGGCCCcAGUUUauGCUaagggCGGUGCUa -3'
miRNA:   3'- -CCCUGGGuUUAAAguCGG-----GCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 120153 0.66 0.941285
Target:  5'- uGGaACCCGuguauccauguauGGUUaUCGuGCCCagGGUGCCCa -3'
miRNA:   3'- cCC-UGGGU-------------UUAA-AGU-CGGG--CCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 55331 0.66 0.946284
Target:  5'- -uGACCUGGAag-UAGCaCCGG-GCCCg -3'
miRNA:   3'- ccCUGGGUUUaaaGUCG-GGCCaCGGG- -5'
13289 5' -54.6 NC_003409.1 + 50960 0.66 0.941751
Target:  5'- aGGGACUCGccacacucuucAUUUC-GCaCCGGUGUCUa -3'
miRNA:   3'- -CCCUGGGUu----------UAAAGuCG-GGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 63966 0.67 0.921201
Target:  5'- aGGGGCUCAGGc----GCCaGGUGUCCa -3'
miRNA:   3'- -CCCUGGGUUUaaaguCGGgCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 73557 0.67 0.903237
Target:  5'- aGGGGCCguGAUUaCuGCgacaaCGGUGCCg -3'
miRNA:   3'- -CCCUGGguUUAAaGuCGg----GCCACGGg -5'
13289 5' -54.6 NC_003409.1 + 48616 0.67 0.910076
Target:  5'- cGGGACUUAccuagcUCGGCCUGGaaacugugaccccugGCCCa -3'
miRNA:   3'- -CCCUGGGUuuaa--AGUCGGGCCa--------------CGGG- -5'
13289 5' -54.6 NC_003409.1 + 18972 0.67 0.90824
Target:  5'- cGGGGCCauuuuggUC-GCCUGGagcUGCCCc -3'
miRNA:   3'- -CCCUGGguuuaa-AGuCGGGCC---ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 128069 0.67 0.915455
Target:  5'- aGGGGCCCAugcgg-GGCUCuGcUGCCCu -3'
miRNA:   3'- -CCCUGGGUuuaaagUCGGGcC-ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 77438 0.67 0.921201
Target:  5'- uGGGACCgGGcgaa-GGCCUGGcgcugaGCCCa -3'
miRNA:   3'- -CCCUGGgUUuaaagUCGGGCCa-----CGGG- -5'
13289 5' -54.6 NC_003409.1 + 28614 0.67 0.89677
Target:  5'- aGGGGCCagcuuGAGUcagUUUAGCaCUGGgacUGCCCa -3'
miRNA:   3'- -CCCUGGg----UUUA---AAGUCG-GGCC---ACGGG- -5'
13289 5' -54.6 NC_003409.1 + 121348 0.67 0.89677
Target:  5'- -uGACCUAGGUagUC--CCUGGUGCCCu -3'
miRNA:   3'- ccCUGGGUUUAa-AGucGGGCCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 126491 0.67 0.909466
Target:  5'- aGGGAUCCugggguGAUgacaCAGCCauguuGGUGCUCc -3'
miRNA:   3'- -CCCUGGGu-----UUAaa--GUCGGg----CCACGGG- -5'
13289 5' -54.6 NC_003409.1 + 97314 0.67 0.915455
Target:  5'- aGGGugCgAGGcaUCAuGCCCGGggugUGCCUu -3'
miRNA:   3'- -CCCugGgUUUaaAGU-CGGGCC----ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.