miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 5' -54.4 NC_003409.1 + 27794 0.66 0.947176
Target:  5'- aUCUGGCGaucaGUGUAccauauucccACGACCC-AUCa -3'
miRNA:   3'- aGGACCGCga--CACAU----------UGCUGGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 23118 0.66 0.942676
Target:  5'- aUUUGGUGCUGUuaAGCGGggUUCUGCCg -3'
miRNA:   3'- aGGACCGCGACAcaUUGCU--GGGAUGG- -5'
13351 5' -54.4 NC_003409.1 + 38277 0.66 0.942676
Target:  5'- gCUUGGCGCccGUGaUGGCGccguCCCUuCCu -3'
miRNA:   3'- aGGACCGCGa-CAC-AUUGCu---GGGAuGG- -5'
13351 5' -54.4 NC_003409.1 + 31662 0.66 0.937934
Target:  5'- gUCUGG-GUgGUGUGACGGCUUggaUGCCg -3'
miRNA:   3'- aGGACCgCGaCACAUUGCUGGG---AUGG- -5'
13351 5' -54.4 NC_003409.1 + 77453 0.66 0.937934
Target:  5'- gCCUGGCGCUGa------GCCCaGCCg -3'
miRNA:   3'- aGGACCGCGACacauugcUGGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 120385 0.66 0.937934
Target:  5'- -gCUGGCGCUc----ACGGCCCgugUGCCa -3'
miRNA:   3'- agGACCGCGAcacauUGCUGGG---AUGG- -5'
13351 5' -54.4 NC_003409.1 + 68865 0.66 0.937934
Target:  5'- aCCUGGUGCUu----ACGGCCCaGCa -3'
miRNA:   3'- aGGACCGCGAcacauUGCUGGGaUGg -5'
13351 5' -54.4 NC_003409.1 + 69183 0.66 0.937934
Target:  5'- gCCUGGCGUUuaGUGugGAUCCg--- -3'
miRNA:   3'- aGGACCGCGAcaCAUugCUGGGaugg -5'
13351 5' -54.4 NC_003409.1 + 123762 0.66 0.928251
Target:  5'- aUUUGGCGCcaugggugcuggugUGUGUGgggggcaguguucucACGACCCaucUACCu -3'
miRNA:   3'- aGGACCGCG--------------ACACAU---------------UGCUGGG---AUGG- -5'
13351 5' -54.4 NC_003409.1 + 37822 0.67 0.92224
Target:  5'- ----uGCGCUa-GUGGCGAUCCUGCCu -3'
miRNA:   3'- aggacCGCGAcaCAUUGCUGGGAUGG- -5'
13351 5' -54.4 NC_003409.1 + 116319 0.67 0.916518
Target:  5'- cCCUGGCGUUuUGga--GACCCUuaaagagaaagACCa -3'
miRNA:   3'- aGGACCGCGAcACauugCUGGGA-----------UGG- -5'
13351 5' -54.4 NC_003409.1 + 109375 0.67 0.916518
Target:  5'- --gUGGCGCUGgccccgcGCGACCUgACCu -3'
miRNA:   3'- aggACCGCGACacau---UGCUGGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 38178 0.67 0.912968
Target:  5'- cCUUGGCGCUGUGgccGccacacaaauagcucGCGugUCcGCCa -3'
miRNA:   3'- aGGACCGCGACACa--U---------------UGCugGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 56990 0.67 0.910552
Target:  5'- aUCCUGucCGCUGUGUGgaccAUGACgCUugACCu -3'
miRNA:   3'- -AGGACc-GCGACACAU----UGCUGgGA--UGG- -5'
13351 5' -54.4 NC_003409.1 + 114609 0.68 0.877138
Target:  5'- cUCCgaGGCGCg--GgcACGGCCCUGa- -3'
miRNA:   3'- -AGGa-CCGCGacaCauUGCUGGGAUgg -5'
13351 5' -54.4 NC_003409.1 + 38362 0.68 0.874949
Target:  5'- uUCgUGGCGgacacgcgagcuauUUGUGUGGCGGCCacagcGCCa -3'
miRNA:   3'- -AGgACCGC--------------GACACAUUGCUGGga---UGG- -5'
13351 5' -54.4 NC_003409.1 + 21932 0.68 0.869764
Target:  5'- aUCCUGcucguCGCUGUGcUGACuGCCUUGCUu -3'
miRNA:   3'- -AGGACc----GCGACAC-AUUGcUGGGAUGG- -5'
13351 5' -54.4 NC_003409.1 + 33815 0.69 0.846351
Target:  5'- gUCCauggcgGGCGCUGUcccUGGCGcGCCCgUACCc -3'
miRNA:   3'- -AGGa-----CCGCGACAc--AUUGC-UGGG-AUGG- -5'
13351 5' -54.4 NC_003409.1 + 75008 0.69 0.821145
Target:  5'- uUCCcaaagUGGCGCgcccgGUGACGAacaUCUGCCa -3'
miRNA:   3'- -AGG-----ACCGCGaca--CAUUGCUg--GGAUGG- -5'
13351 5' -54.4 NC_003409.1 + 93134 0.69 0.812379
Target:  5'- aUCCgucggGGUGUgcacGUGUAAUGgGCCCUGCa -3'
miRNA:   3'- -AGGa----CCGCGa---CACAUUGC-UGGGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.