miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1339 5' -52.5 NC_001335.1 + 47026 0.66 0.844529
Target:  5'- uUCCGGUugcccUUGCCggGGCGCUuCAUCu -3'
miRNA:   3'- gAGGCUAcuu--AGCGGa-UCGCGA-GUAG- -5'
1339 5' -52.5 NC_001335.1 + 26537 0.66 0.844529
Target:  5'- -gCCGAUGggUCGCauca-GCUCcUCg -3'
miRNA:   3'- gaGGCUACuuAGCGgaucgCGAGuAG- -5'
1339 5' -52.5 NC_001335.1 + 6479 1.11 0.001211
Target:  5'- cCUCCGAUGAAUCGCCUAGCGCUCAUCa -3'
miRNA:   3'- -GAGGCUACUUAGCGGAUCGCGAGUAG- -5'
1339 5' -52.5 NC_001335.1 + 17971 0.69 0.667823
Target:  5'- uUCuCGAccuUGAGUCGCUU-GCGCUCcUCu -3'
miRNA:   3'- gAG-GCU---ACUUAGCGGAuCGCGAGuAG- -5'
1339 5' -52.5 NC_001335.1 + 364 0.68 0.734464
Target:  5'- gUCUuuaGAUGAG-CGCCUgguGGCGCUCuuAUCg -3'
miRNA:   3'- gAGG---CUACUUaGCGGA---UCGCGAG--UAG- -5'
1339 5' -52.5 NC_001335.1 + 17039 0.67 0.76648
Target:  5'- gCUCCGGUGAGcaucgUGCCgagcGUGCUCGc- -3'
miRNA:   3'- -GAGGCUACUUa----GCGGau--CGCGAGUag -5'
1339 5' -52.5 NC_001335.1 + 41468 0.67 0.773772
Target:  5'- -aCCGG-GAAgucggcguucguccUCGCCUAcGCGCUCAagUCg -3'
miRNA:   3'- gaGGCUaCUU--------------AGCGGAU-CGCGAGU--AG- -5'
1339 5' -52.5 NC_001335.1 + 18169 0.67 0.787111
Target:  5'- uUCgCGA--AGUCGaCCgguGCGCUCAUCa -3'
miRNA:   3'- gAG-GCUacUUAGC-GGau-CGCGAGUAG- -5'
1339 5' -52.5 NC_001335.1 + 7403 0.66 0.825288
Target:  5'- cCUUCGAUGAccucugcAUCGCgUGGCcUUCAUUg -3'
miRNA:   3'- -GAGGCUACU-------UAGCGgAUCGcGAGUAG- -5'
1339 5' -52.5 NC_001335.1 + 8701 0.66 0.835491
Target:  5'- -gCCGAggcgGAAacccUCgacgGCCUGGCGCUCGg- -3'
miRNA:   3'- gaGGCUa---CUU----AG----CGGAUCGCGAGUag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.