Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13460 | 3' | -42.2 | NC_003409.1 | + | 90333 | 0.66 | 1 |
Target: 5'- gUGUCGCcuccgggCUGUGAUguUGCGAu -3' miRNA: 3'- -ACAGUGuaa----GACACUG--GCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 26384 | 0.66 | 1 |
Target: 5'- aGUCGCcuuaacCUGUGGCCG-GAg -3' miRNA: 3'- aCAGUGuaa---GACACUGGCgCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 50390 | 0.66 | 1 |
Target: 5'- aGUUACGUg-UGUGcggaccACCGCGAa -3' miRNA: 3'- aCAGUGUAagACAC------UGGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 29327 | 0.66 | 1 |
Target: 5'- uUGUCACAUUUagggcaaaGUGGCC-CGAu -3' miRNA: 3'- -ACAGUGUAAGa-------CACUGGcGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 52674 | 0.66 | 1 |
Target: 5'- aGUCACcgUCcGUG-CCGCc- -3' miRNA: 3'- aCAGUGuaAGaCACuGGCGcu -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 131466 | 0.66 | 1 |
Target: 5'- cUGUCuCGUUCUGcaaaACCGUGAc -3' miRNA: 3'- -ACAGuGUAAGACac--UGGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 9214 | 0.67 | 0.999999 |
Target: 5'- cUGUCAagcccCUGUaGACCGUGAc -3' miRNA: 3'- -ACAGUguaa-GACA-CUGGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 134565 | 0.67 | 0.999999 |
Target: 5'- ---gACAacCUGUGACUGCGAc -3' miRNA: 3'- acagUGUaaGACACUGGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 5264 | 0.67 | 0.999998 |
Target: 5'- aGUcCAUGUUCUGUGACCu--- -3' miRNA: 3'- aCA-GUGUAAGACACUGGcgcu -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 75412 | 0.67 | 0.999998 |
Target: 5'- aGUCACAUUCUccca-CGCGAa -3' miRNA: 3'- aCAGUGUAAGAcacugGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 41544 | 0.67 | 0.999998 |
Target: 5'- aGUcCGCGcgUCcGUGGCCGCGu -3' miRNA: 3'- aCA-GUGUa-AGaCACUGGCGCu -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 25656 | 0.68 | 0.999995 |
Target: 5'- cGUCACAUaucUCUGUGcACCcaaGUGGu -3' miRNA: 3'- aCAGUGUA---AGACAC-UGG---CGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 8415 | 0.68 | 0.999995 |
Target: 5'- cGUCACAUUUggagGACUGgGAa -3' miRNA: 3'- aCAGUGUAAGaca-CUGGCgCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 46884 | 0.68 | 0.999995 |
Target: 5'- cGUCaaGCAUaacUCUGUGGCUgGCGGc -3' miRNA: 3'- aCAG--UGUA---AGACACUGG-CGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 121624 | 0.68 | 0.99999 |
Target: 5'- -aUCACAUUCUGagGACgGCa- -3' miRNA: 3'- acAGUGUAAGACa-CUGgCGcu -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 123499 | 0.68 | 0.999987 |
Target: 5'- cUGUCAgGUUCucccaucgacgacgcUG-GGCCGCGAg -3' miRNA: 3'- -ACAGUgUAAG---------------ACaCUGGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 73617 | 0.7 | 0.999821 |
Target: 5'- --cCAUAUUCUGUGA-CGCGGc -3' miRNA: 3'- acaGUGUAAGACACUgGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 15486 | 0.7 | 0.999821 |
Target: 5'- -cUCACAgUCUGgauaGACUGCGAa -3' miRNA: 3'- acAGUGUaAGACa---CUGGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 60848 | 0.7 | 0.999765 |
Target: 5'- gUGcCACGUUCcgGUGgacGCCGCGGg -3' miRNA: 3'- -ACaGUGUAAGa-CAC---UGGCGCU- -5' |
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13460 | 3' | -42.2 | NC_003409.1 | + | 32264 | 0.71 | 0.999605 |
Target: 5'- uUGUUAUuggaagggGUUCUGUGACUGgGAg -3' miRNA: 3'- -ACAGUG--------UAAGACACUGGCgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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