miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13460 3' -42.2 NC_003409.1 + 90333 0.66 1
Target:  5'- gUGUCGCcuccgggCUGUGAUguUGCGAu -3'
miRNA:   3'- -ACAGUGuaa----GACACUG--GCGCU- -5'
13460 3' -42.2 NC_003409.1 + 26384 0.66 1
Target:  5'- aGUCGCcuuaacCUGUGGCCG-GAg -3'
miRNA:   3'- aCAGUGuaa---GACACUGGCgCU- -5'
13460 3' -42.2 NC_003409.1 + 50390 0.66 1
Target:  5'- aGUUACGUg-UGUGcggaccACCGCGAa -3'
miRNA:   3'- aCAGUGUAagACAC------UGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 29327 0.66 1
Target:  5'- uUGUCACAUUUagggcaaaGUGGCC-CGAu -3'
miRNA:   3'- -ACAGUGUAAGa-------CACUGGcGCU- -5'
13460 3' -42.2 NC_003409.1 + 52674 0.66 1
Target:  5'- aGUCACcgUCcGUG-CCGCc- -3'
miRNA:   3'- aCAGUGuaAGaCACuGGCGcu -5'
13460 3' -42.2 NC_003409.1 + 131466 0.66 1
Target:  5'- cUGUCuCGUUCUGcaaaACCGUGAc -3'
miRNA:   3'- -ACAGuGUAAGACac--UGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 9214 0.67 0.999999
Target:  5'- cUGUCAagcccCUGUaGACCGUGAc -3'
miRNA:   3'- -ACAGUguaa-GACA-CUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 134565 0.67 0.999999
Target:  5'- ---gACAacCUGUGACUGCGAc -3'
miRNA:   3'- acagUGUaaGACACUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 5264 0.67 0.999998
Target:  5'- aGUcCAUGUUCUGUGACCu--- -3'
miRNA:   3'- aCA-GUGUAAGACACUGGcgcu -5'
13460 3' -42.2 NC_003409.1 + 75412 0.67 0.999998
Target:  5'- aGUCACAUUCUccca-CGCGAa -3'
miRNA:   3'- aCAGUGUAAGAcacugGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 41544 0.67 0.999998
Target:  5'- aGUcCGCGcgUCcGUGGCCGCGu -3'
miRNA:   3'- aCA-GUGUa-AGaCACUGGCGCu -5'
13460 3' -42.2 NC_003409.1 + 25656 0.68 0.999995
Target:  5'- cGUCACAUaucUCUGUGcACCcaaGUGGu -3'
miRNA:   3'- aCAGUGUA---AGACAC-UGG---CGCU- -5'
13460 3' -42.2 NC_003409.1 + 8415 0.68 0.999995
Target:  5'- cGUCACAUUUggagGACUGgGAa -3'
miRNA:   3'- aCAGUGUAAGaca-CUGGCgCU- -5'
13460 3' -42.2 NC_003409.1 + 46884 0.68 0.999995
Target:  5'- cGUCaaGCAUaacUCUGUGGCUgGCGGc -3'
miRNA:   3'- aCAG--UGUA---AGACACUGG-CGCU- -5'
13460 3' -42.2 NC_003409.1 + 121624 0.68 0.99999
Target:  5'- -aUCACAUUCUGagGACgGCa- -3'
miRNA:   3'- acAGUGUAAGACa-CUGgCGcu -5'
13460 3' -42.2 NC_003409.1 + 123499 0.68 0.999987
Target:  5'- cUGUCAgGUUCucccaucgacgacgcUG-GGCCGCGAg -3'
miRNA:   3'- -ACAGUgUAAG---------------ACaCUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 73617 0.7 0.999821
Target:  5'- --cCAUAUUCUGUGA-CGCGGc -3'
miRNA:   3'- acaGUGUAAGACACUgGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 15486 0.7 0.999821
Target:  5'- -cUCACAgUCUGgauaGACUGCGAa -3'
miRNA:   3'- acAGUGUaAGACa---CUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 60848 0.7 0.999765
Target:  5'- gUGcCACGUUCcgGUGgacGCCGCGGg -3'
miRNA:   3'- -ACaGUGUAAGa-CAC---UGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 32264 0.71 0.999605
Target:  5'- uUGUUAUuggaagggGUUCUGUGACUGgGAg -3'
miRNA:   3'- -ACAGUG--------UAAGACACUGGCgCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.