miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13546 5' -50.4 NC_003444.1 + 8863 0.66 0.838248
Target:  5'- -cGCUCAagcUGACGGU--AGGUugCCAGCAg -3'
miRNA:   3'- guCGAGU---ACUGCUAagUCUA--GGUCGU- -5'
13546 5' -50.4 NC_003444.1 + 8952 0.67 0.798371
Target:  5'- aCAGCguguUCA-GGCGGUUCGGAacgCUGGCAu -3'
miRNA:   3'- -GUCG----AGUaCUGCUAAGUCUa--GGUCGU- -5'
13546 5' -50.4 NC_003444.1 + 10705 0.7 0.615611
Target:  5'- uGGCU----ACGA-UCAGAUCCAGCAg -3'
miRNA:   3'- gUCGAguacUGCUaAGUCUAGGUCGU- -5'
13546 5' -50.4 NC_003444.1 + 16277 0.73 0.466776
Target:  5'- uCAGUUCAgugGugGugcgCGGAUCCAGCu -3'
miRNA:   3'- -GUCGAGUa--CugCuaa-GUCUAGGUCGu -5'
13546 5' -50.4 NC_003444.1 + 7198 1.09 0.001669
Target:  5'- uCAGCUCAUGACGAUUCAGAUCCAGCAg -3'
miRNA:   3'- -GUCGAGUACUGCUAAGUCUAGGUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.