miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1366 3' -54.7 NC_001335.1 + 40641 0.66 0.756578
Target:  5'- gGCGUCG-GAgguacacGCGGAgagGCCCaGGAUcGCCg -3'
miRNA:   3'- -CGUAGCaCU-------UGUCU---CGGG-CCUAcCGG- -5'
1366 3' -54.7 NC_001335.1 + 30330 0.66 0.730398
Target:  5'- cGCcUCGUccaguucgguacucaGGACGaAGCCUGGGUGGUg -3'
miRNA:   3'- -CGuAGCA---------------CUUGUcUCGGGCCUACCGg -5'
1366 3' -54.7 NC_001335.1 + 5971 0.66 0.726147
Target:  5'- gGUAUCGgcaGGCAGAccagGCCCGaGcgGGUCg -3'
miRNA:   3'- -CGUAGCac-UUGUCU----CGGGC-CuaCCGG- -5'
1366 3' -54.7 NC_001335.1 + 28502 0.66 0.726147
Target:  5'- cGCAUCGgagguggagUGAGCAuuGCCuCGGcuAUGGCg -3'
miRNA:   3'- -CGUAGC---------ACUUGUcuCGG-GCC--UACCGg -5'
1366 3' -54.7 NC_001335.1 + 24489 0.66 0.726147
Target:  5'- uGCGUCGUGGucacCAGGaauGCCuCGG--GGCCc -3'
miRNA:   3'- -CGUAGCACUu---GUCU---CGG-GCCuaCCGG- -5'
1366 3' -54.7 NC_001335.1 + 15522 0.67 0.704682
Target:  5'- aCGUCGUGGugGGcAGCaguaCCGGGgcUGGaCCg -3'
miRNA:   3'- cGUAGCACUugUC-UCG----GGCCU--ACC-GG- -5'
1366 3' -54.7 NC_001335.1 + 25357 0.67 0.682931
Target:  5'- uCGUCGUGAACAaGGCuaCCGGGUuGCa -3'
miRNA:   3'- cGUAGCACUUGUcUCG--GGCCUAcCGg -5'
1366 3' -54.7 NC_001335.1 + 23124 0.67 0.676363
Target:  5'- gGCGUCGUcuccgcgaugggugcGAACuaccgccgcuGGGGCUgGGAaGGCCa -3'
miRNA:   3'- -CGUAGCA---------------CUUG----------UCUCGGgCCUaCCGG- -5'
1366 3' -54.7 NC_001335.1 + 50781 0.67 0.671977
Target:  5'- cGCGUUGgcucGCGGuGCCuuaCGGAUGGCg -3'
miRNA:   3'- -CGUAGCacu-UGUCuCGG---GCCUACCGg -5'
1366 3' -54.7 NC_001335.1 + 32806 0.68 0.63893
Target:  5'- -gGUCGUGAaggguGCGGA-CCCGGccgacgugcUGGCCa -3'
miRNA:   3'- cgUAGCACU-----UGUCUcGGGCCu--------ACCGG- -5'
1366 3' -54.7 NC_001335.1 + 25035 0.68 0.63893
Target:  5'- uGCGUgCGUGGu--GGGCCgGGAUGGgUa -3'
miRNA:   3'- -CGUA-GCACUuguCUCGGgCCUACCgG- -5'
1366 3' -54.7 NC_001335.1 + 17030 0.68 0.617953
Target:  5'- aGCAUCGUGccgagcgugcucgcCAGcGUCUGGAaGGCCg -3'
miRNA:   3'- -CGUAGCACuu------------GUCuCGGGCCUaCCGG- -5'
1366 3' -54.7 NC_001335.1 + 39139 0.68 0.61685
Target:  5'- cGCAgcUCuacGAGCugGGAGaCCCGGAuccUGGCCa -3'
miRNA:   3'- -CGU--AGca-CUUG--UCUC-GGGCCU---ACCGG- -5'
1366 3' -54.7 NC_001335.1 + 28850 0.68 0.593725
Target:  5'- gGCcUCGUGGAggcgaauCAGAGCCCGacaGGUCa -3'
miRNA:   3'- -CGuAGCACUU-------GUCUCGGGCcuaCCGG- -5'
1366 3' -54.7 NC_001335.1 + 43294 0.69 0.583853
Target:  5'- aGC-UCGauguUGAACGGaAGCUCG-AUGGCCg -3'
miRNA:   3'- -CGuAGC----ACUUGUC-UCGGGCcUACCGG- -5'
1366 3' -54.7 NC_001335.1 + 12577 0.69 0.572924
Target:  5'- aCGUUGUGGGCcaaGGAGCCUGagcccgaaguGAUGGCg -3'
miRNA:   3'- cGUAGCACUUG---UCUCGGGC----------CUACCGg -5'
1366 3' -54.7 NC_001335.1 + 31898 0.69 0.562044
Target:  5'- uCGUCGggguggagcuUGAACAGAGCCgGGGgcagaugGuGCCa -3'
miRNA:   3'- cGUAGC----------ACUUGUCUCGGgCCUa------C-CGG- -5'
1366 3' -54.7 NC_001335.1 + 49656 0.7 0.529772
Target:  5'- -----aUGAGCuucGAGaCCUGGAUGGCCg -3'
miRNA:   3'- cguagcACUUGu--CUC-GGGCCUACCGG- -5'
1366 3' -54.7 NC_001335.1 + 27172 0.72 0.372979
Target:  5'- aGCGUCccgGUGuucaucCAGAuGCCCGG-UGGCCa -3'
miRNA:   3'- -CGUAG---CACuu----GUCU-CGGGCCuACCGG- -5'
1366 3' -54.7 NC_001335.1 + 24750 0.72 0.372101
Target:  5'- aCAUCGUGGACGacggcaugacgauGaAGCuCCGGGUGcGCCg -3'
miRNA:   3'- cGUAGCACUUGU-------------C-UCG-GGCCUAC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.