miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1387 3' -53.7 NC_001335.1 + 30048 0.66 0.807531
Target:  5'- gGGCCGGG-GGUccaccagcuUCGCCag-GAUCUGc -3'
miRNA:   3'- -CCGGCUUgCCA---------AGCGGguaCUAGACu -5'
1387 3' -53.7 NC_001335.1 + 8984 0.66 0.797879
Target:  5'- gGGCUGAGUGGUUCaacguCCCGcacGGUCUGGg -3'
miRNA:   3'- -CCGGCUUGCCAAGc----GGGUa--CUAGACU- -5'
1387 3' -53.7 NC_001335.1 + 17023 0.66 0.778059
Target:  5'- uGCCGAGCGuGcUCGCCagc-GUCUGGa -3'
miRNA:   3'- cCGGCUUGC-CaAGCGGguacUAGACU- -5'
1387 3' -53.7 NC_001335.1 + 33855 0.68 0.697938
Target:  5'- uGGCCGAgguugcacggcucccACGGUUCGagaGUGAUCUc- -3'
miRNA:   3'- -CCGGCU---------------UGCCAAGCgggUACUAGAcu -5'
1387 3' -53.7 NC_001335.1 + 9497 0.69 0.605181
Target:  5'- aGGCCauGCGGaUCGCCUAccgGAUCaUGAa -3'
miRNA:   3'- -CCGGcuUGCCaAGCGGGUa--CUAG-ACU- -5'
1387 3' -53.7 NC_001335.1 + 16672 0.7 0.572145
Target:  5'- uGCCGAACGaGUUCGCgCcgGcgUUGGa -3'
miRNA:   3'- cCGGCUUGC-CAAGCGgGuaCuaGACU- -5'
1387 3' -53.7 NC_001335.1 + 10320 0.7 0.550357
Target:  5'- gGGCCGGAUcGUUcuugacagCGCCgAUGAUCUGu -3'
miRNA:   3'- -CCGGCUUGcCAA--------GCGGgUACUAGACu -5'
1387 3' -53.7 NC_001335.1 + 21669 0.72 0.45631
Target:  5'- cGCCGAGCaGUgucacguagUCGCCUAUGGagUCUGGg -3'
miRNA:   3'- cCGGCUUGcCA---------AGCGGGUACU--AGACU- -5'
1387 3' -53.7 NC_001335.1 + 38345 0.72 0.426895
Target:  5'- cGGCCGAGCGGaacuaaGCCguUcGGUCUGGg -3'
miRNA:   3'- -CCGGCUUGCCaag---CGGguA-CUAGACU- -5'
1387 3' -53.7 NC_001335.1 + 33627 1.12 0.000962
Target:  5'- aGGCCGAACGGUUCGCCCAUGAUCUGAg -3'
miRNA:   3'- -CCGGCUUGCCAAGCGGGUACUAGACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.