miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 201586 0.66 0.996504
Target:  5'- uGGUGgccaccagcACGAUccaGgGgUCGCGCGgcgagaGCUGGCg -3'
miRNA:   3'- -CCAC---------UGCUA---CgCaAGCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 225759 0.66 0.996504
Target:  5'- gGGUGAucagcgcgcUGGUGCagcaGuCGCGACUGGUg -3'
miRNA:   3'- -CCACU---------GCUACGcaagC-GCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 127831 0.66 0.996504
Target:  5'- uGGUGACGcUGa--UCGCcgaGCAcCUGGCc -3'
miRNA:   3'- -CCACUGCuACgcaAGCG---CGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 64287 0.66 0.996504
Target:  5'- uGGUcGAUGGUGCGcuccagCGCcuGCAGCUccucuaggGGCa -3'
miRNA:   3'- -CCA-CUGCUACGCaa----GCG--CGUUGA--------CCG- -5'
13949 3' -52.7 NC_003521.1 + 5958 0.66 0.996504
Target:  5'- cGGUGACGgcGCccGUUCccCGCGGacgGGCg -3'
miRNA:   3'- -CCACUGCuaCG--CAAGc-GCGUUga-CCG- -5'
13949 3' -52.7 NC_003521.1 + 36467 0.66 0.996504
Target:  5'- uGUGGCGAcaGCGUUUGaGCcGCUcGGCc -3'
miRNA:   3'- cCACUGCUa-CGCAAGCgCGuUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 239729 0.66 0.996504
Target:  5'- uGGUGgccaccagcACGAUccaGgGgUCGCGCGgcgagaGCUGGCg -3'
miRNA:   3'- -CCAC---------UGCUA---CgCaAGCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 37751 0.66 0.99645
Target:  5'- cGUGGCGAUGgGggUGCccuGCGGCaccacggUGGCc -3'
miRNA:   3'- cCACUGCUACgCaaGCG---CGUUG-------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 55812 0.66 0.99645
Target:  5'- --aGAUGGUGCGcUCGaaccaguCGCAGCgcGGCa -3'
miRNA:   3'- ccaCUGCUACGCaAGC-------GCGUUGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 127070 0.66 0.995928
Target:  5'- aGGUGcuggaGGUGCG--CGCGgAGCUGGa -3'
miRNA:   3'- -CCACug---CUACGCaaGCGCgUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 229811 0.66 0.995928
Target:  5'- cGGcUGACGuucauUGCGgccgGUGCGACcGGCu -3'
miRNA:   3'- -CC-ACUGCu----ACGCaag-CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 128592 0.66 0.995928
Target:  5'- uGGUaGGCGAUggccgucacgGCGUUCuCGgGGCUGaGCa -3'
miRNA:   3'- -CCA-CUGCUA----------CGCAAGcGCgUUGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 40884 0.66 0.995928
Target:  5'- --cGACGAUGCGg-CGagaaGCGGCUgcaccGGCg -3'
miRNA:   3'- ccaCUGCUACGCaaGCg---CGUUGA-----CCG- -5'
13949 3' -52.7 NC_003521.1 + 195370 0.66 0.995928
Target:  5'- -uUGGCGggGCGUcUGCGgGACgcgGGUc -3'
miRNA:   3'- ccACUGCuaCGCAaGCGCgUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 128149 0.66 0.995928
Target:  5'- --aGACGGUGCcgcuGUgcacgcCGCGCAucCUGGUg -3'
miRNA:   3'- ccaCUGCUACG----CAa-----GCGCGUu-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 228726 0.66 0.995345
Target:  5'- uGGUGgGCGAgucgcuacccuccgGCcucuuucacgccgaGUUCGUGCuGCUGGCu -3'
miRNA:   3'- -CCAC-UGCUa-------------CG--------------CAAGCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 99309 0.66 0.995276
Target:  5'- uGUGGUGGUGCGacUUCGCGCccagggauGACgGGUg -3'
miRNA:   3'- cCACUGCUACGC--AAGCGCG--------UUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 19205 0.66 0.995276
Target:  5'- --aGACGGauCGcUCGUGCGAcCUGGCu -3'
miRNA:   3'- ccaCUGCUacGCaAGCGCGUU-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 45713 0.66 0.995276
Target:  5'- cGGcGACGAUGaCGaggaccccCGCGacgGACUGGCc -3'
miRNA:   3'- -CCaCUGCUAC-GCaa------GCGCg--UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 111988 0.66 0.995276
Target:  5'- aGGcUGugGGUgGCGUgccgGCGCAcggACUGGa -3'
miRNA:   3'- -CC-ACugCUA-CGCAag--CGCGU---UGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.