miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14649 5' -44.9 NC_003525.1 + 56445 0.71 0.952542
Target:  5'- aGGGCGUUgcCCUgaCCGGAGACGGGGGGa -3'
miRNA:   3'- -CUUGCGAauGGA--GGCCUUUGUUUUUU- -5'
14649 5' -44.9 NC_003525.1 + 7962 0.66 0.998707
Target:  5'- gGGACGCUgaaAUCUCCugaugGGAGGCGAu--- -3'
miRNA:   3'- -CUUGCGAa--UGGAGG-----CCUUUGUUuuuu -5'
14649 5' -44.9 NC_003525.1 + 3756 0.66 0.998332
Target:  5'- aGGACGUgaaggagCCGGAAGCGAAGGGg -3'
miRNA:   3'- -CUUGCGaaugga-GGCCUUUGUUUUUU- -5'
14649 5' -44.9 NC_003525.1 + 26469 0.68 0.990448
Target:  5'- -cGCGCUUGCCgcugUGGGAGCAGGu-- -3'
miRNA:   3'- cuUGCGAAUGGag--GCCUUUGUUUuuu -5'
14649 5' -44.9 NC_003525.1 + 45004 0.69 0.987199
Target:  5'- cAACGCUUACCcagCgCGGucuGGCAAAGAu -3'
miRNA:   3'- cUUGCGAAUGGa--G-GCCu--UUGUUUUUu -5'
14649 5' -44.9 NC_003525.1 + 55765 0.7 0.972288
Target:  5'- cGACGU--AUUUCUGGAAGCAGAAGAa -3'
miRNA:   3'- cUUGCGaaUGGAGGCCUUUGUUUUUU- -5'
14649 5' -44.9 NC_003525.1 + 16162 0.71 0.957089
Target:  5'- uGAGCGU-UACCUgCCGGAggUGAAGAc -3'
miRNA:   3'- -CUUGCGaAUGGA-GGCCUuuGUUUUUu -5'
14649 5' -44.9 NC_003525.1 + 50071 0.67 0.99709
Target:  5'- aAACGCcaaaaUACUgaggCCGGAAGCGGGGAu -3'
miRNA:   3'- cUUGCGa----AUGGa---GGCCUUUGUUUUUu -5'
14649 5' -44.9 NC_003525.1 + 27149 0.67 0.996492
Target:  5'- aAGCGCccugucCCUCCGGAGAUAu---- -3'
miRNA:   3'- cUUGCGaau---GGAGGCCUUUGUuuuuu -5'
14649 5' -44.9 NC_003525.1 + 3522 1.07 0.01719
Target:  5'- gGAACGCUUACCUCCGGAAACAAAAAAc -3'
miRNA:   3'- -CUUGCGAAUGGAGGCCUUUGUUUUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.