miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14660 5' -47.7 NC_003525.1 + 27450 0.71 0.861552
Target:  5'- aUUGCCGugGA--UCGGUuuAACCGCGa- -3'
miRNA:   3'- -AAUGGCugUUauAGUCA--UUGGCGCaa -5'
14660 5' -47.7 NC_003525.1 + 47771 0.67 0.958928
Target:  5'- cUGCCGcACGAugcUAUCcgcGUGACCGUGUUc -3'
miRNA:   3'- aAUGGC-UGUU---AUAGu--CAUUGGCGCAA- -5'
14660 5' -47.7 NC_003525.1 + 56091 0.67 0.966727
Target:  5'- -cAUCGACAGUAUCAGagGugCGCc-- -3'
miRNA:   3'- aaUGGCUGUUAUAGUCa-UugGCGcaa -5'
14660 5' -47.7 NC_003525.1 + 48725 0.67 0.973417
Target:  5'- -cACCGuacaGCAAUAUCAG--GCCGUGg- -3'
miRNA:   3'- aaUGGC----UGUUAUAGUCauUGGCGCaa -5'
14660 5' -47.7 NC_003525.1 + 27816 0.66 0.981541
Target:  5'- aUACCGGCA--AUCAG-AAUUGCGg- -3'
miRNA:   3'- aAUGGCUGUuaUAGUCaUUGGCGCaa -5'
14660 5' -47.7 NC_003525.1 + 1533 0.67 0.970206
Target:  5'- gUUAUgGAUAGUcAUCGGcUGACCGCGa- -3'
miRNA:   3'- -AAUGgCUGUUA-UAGUC-AUUGGCGCaa -5'
14660 5' -47.7 NC_003525.1 + 1987 0.69 0.922142
Target:  5'- -gGCUGGCcu--UCAGUAACCGUGg- -3'
miRNA:   3'- aaUGGCUGuuauAGUCAUUGGCGCaa -5'
14660 5' -47.7 NC_003525.1 + 19601 1.03 0.01435
Target:  5'- uUUACCGACAAUAUCAGUAACCGCGUUu -3'
miRNA:   3'- -AAUGGCUGUUAUAGUCAUUGGCGCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.