Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14667 | 3' | -50.5 | NC_003525.1 | + | 26812 | 1.13 | 0.001987 |
Target: 5'- aCCACCAACAACAUUACCGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 46245 | 0.83 | 0.182406 |
Target: 5'- aUCACCAACAACA-UGCCGGaaCAGUACGa -3' miRNA: 3'- -GGUGGUUGUUGUaAUGGCC--GUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 7887 | 0.8 | 0.294756 |
Target: 5'- gCCACCGGCAGCAUcuUACUGaaAGCGCGa -3' miRNA: 3'- -GGUGGUUGUUGUA--AUGGCcgUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 11019 | 0.78 | 0.386669 |
Target: 5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3' miRNA: 3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 18710 | 0.75 | 0.506177 |
Target: 5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3' miRNA: 3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 56823 | 0.74 | 0.549495 |
Target: 5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3' miRNA: 3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 24377 | 0.72 | 0.661293 |
Target: 5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3' miRNA: 3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 35786 | 0.72 | 0.694754 |
Target: 5'- gCCGCCAuacCggUAUUGCa-GCGGCACGa -3' miRNA: 3'- -GGUGGUu--GuuGUAAUGgcCGUCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 5985 | 0.72 | 0.705797 |
Target: 5'- gCCACCGACu-CAUUACCGuGC-GUACc -3' miRNA: 3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 19684 | 0.71 | 0.727645 |
Target: 5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3' miRNA: 3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 29111 | 0.71 | 0.727645 |
Target: 5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3' miRNA: 3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 19796 | 0.71 | 0.727645 |
Target: 5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 22655 | 0.71 | 0.738426 |
Target: 5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3' miRNA: 3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 6137 | 0.7 | 0.770048 |
Target: 5'- aCACCAcACAGCGUgACgGGgAGCugGu -3' miRNA: 3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 26334 | 0.7 | 0.790407 |
Target: 5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3' miRNA: 3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 20434 | 0.7 | 0.790407 |
Target: 5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3' miRNA: 3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 17131 | 0.69 | 0.819625 |
Target: 5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3' miRNA: 3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 16587 | 0.69 | 0.838094 |
Target: 5'- ---aCGACAAUAUUGCUGGCAcCACa -3' miRNA: 3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 52921 | 0.69 | 0.838094 |
Target: 5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3' miRNA: 3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5' |
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14667 | 3' | -50.5 | NC_003525.1 | + | 20188 | 0.69 | 0.855658 |
Target: 5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3' miRNA: 3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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