miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14672 5' -52.3 NC_003525.1 + 58076 0.66 0.887404
Target:  5'- -gAUGUucuuCGCCAccCAUGcCAGCGCCu -3'
miRNA:   3'- caUGCGu---GCGGUucGUACuGUUGCGG- -5'
14672 5' -52.3 NC_003525.1 + 48236 0.66 0.879783
Target:  5'- -gAUGUuucGCGUCAGGUgcuAUGGCAugGUCa -3'
miRNA:   3'- caUGCG---UGCGGUUCG---UACUGUugCGG- -5'
14672 5' -52.3 NC_003525.1 + 6356 0.66 0.879007
Target:  5'- aGU-CGCACGCUguucccacgucuuGAGCcggugcauguUGACAGCGCg -3'
miRNA:   3'- -CAuGCGUGCGG-------------UUCGu---------ACUGUUGCGg -5'
14672 5' -52.3 NC_003525.1 + 25216 0.66 0.871899
Target:  5'- uUACGUacACGCU--GCAUGAUuucCGCCg -3'
miRNA:   3'- cAUGCG--UGCGGuuCGUACUGuu-GCGG- -5'
14672 5' -52.3 NC_003525.1 + 52783 0.66 0.867044
Target:  5'- -aACGCccgcucuccagcucaACGCCAAuuGCAcGACGcccuaGCGCCa -3'
miRNA:   3'- caUGCG---------------UGCGGUU--CGUaCUGU-----UGCGG- -5'
14672 5' -52.3 NC_003525.1 + 35789 0.66 0.863756
Target:  5'- -aGCGC-CGCCAuaccGGUAUuGCAGCGgCa -3'
miRNA:   3'- caUGCGuGCGGU----UCGUAcUGUUGCgG- -5'
14672 5' -52.3 NC_003525.1 + 58326 0.66 0.863756
Target:  5'- uGU-CGaUAC-CCcAGCAUGACAGCGCa -3'
miRNA:   3'- -CAuGC-GUGcGGuUCGUACUGUUGCGg -5'
14672 5' -52.3 NC_003525.1 + 2612 0.66 0.863756
Target:  5'- gGUGCG-ACGUCAGGCGUGGCuaucaGUa -3'
miRNA:   3'- -CAUGCgUGCGGUUCGUACUGuug--CGg -5'
14672 5' -52.3 NC_003525.1 + 56144 0.66 0.863756
Target:  5'- -cGCGUuuaGCGCCAcucuucccGCAUGGCGcaaaauCGCCg -3'
miRNA:   3'- caUGCG---UGCGGUu-------CGUACUGUu-----GCGG- -5'
14672 5' -52.3 NC_003525.1 + 47048 0.66 0.855364
Target:  5'- uUAUGCugguuacuguuGCGCCuguuAGCGcGGCAACGUCc -3'
miRNA:   3'- cAUGCG-----------UGCGGu---UCGUaCUGUUGCGG- -5'
14672 5' -52.3 NC_003525.1 + 21230 0.67 0.837863
Target:  5'- gGUACagGCcCGCCuuGCccGUGGCAACGCg -3'
miRNA:   3'- -CAUG--CGuGCGGuuCG--UACUGUUGCGg -5'
14672 5' -52.3 NC_003525.1 + 46679 0.67 0.828772
Target:  5'- -cAUGCGgGCCAAuGCGcUGACuGACGCg -3'
miRNA:   3'- caUGCGUgCGGUU-CGU-ACUG-UUGCGg -5'
14672 5' -52.3 NC_003525.1 + 20389 0.67 0.828772
Target:  5'- gGUGCGguUGCCGGauauCGUGGCAgACGUCa -3'
miRNA:   3'- -CAUGCguGCGGUUc---GUACUGU-UGCGG- -5'
14672 5' -52.3 NC_003525.1 + 20088 0.67 0.828772
Target:  5'- gGUGCGCGCGC--AGC-UGGCAACcgauCCu -3'
miRNA:   3'- -CAUGCGUGCGguUCGuACUGUUGc---GG- -5'
14672 5' -52.3 NC_003525.1 + 31954 0.67 0.819466
Target:  5'- ---aGCACGCauagguauGGCGUGACugauACGCUu -3'
miRNA:   3'- caugCGUGCGgu------UCGUACUGu---UGCGG- -5'
14672 5' -52.3 NC_003525.1 + 26254 0.67 0.819466
Target:  5'- --uUGuCACGCC-AGCA-GGCGGCGUCu -3'
miRNA:   3'- cauGC-GUGCGGuUCGUaCUGUUGCGG- -5'
14672 5' -52.3 NC_003525.1 + 36116 0.67 0.808995
Target:  5'- -cAUGCAggcUGCCAuuaucgaauggcaGGCAacUGGCGACGCUa -3'
miRNA:   3'- caUGCGU---GCGGU-------------UCGU--ACUGUUGCGG- -5'
14672 5' -52.3 NC_003525.1 + 8122 0.68 0.798291
Target:  5'- -gACGCAcuggugcCGCUGAGCGcauccggugaaacUGuCAGCGCCg -3'
miRNA:   3'- caUGCGU-------GCGGUUCGU-------------ACuGUUGCGG- -5'
14672 5' -52.3 NC_003525.1 + 7317 0.68 0.79037
Target:  5'- aGUACGgGCuugucGCCAGuGUAUGACGauAUGCCc -3'
miRNA:   3'- -CAUGCgUG-----CGGUU-CGUACUGU--UGCGG- -5'
14672 5' -52.3 NC_003525.1 + 59427 0.69 0.738621
Target:  5'- aUAUGCagcaGCGCC-AGCGUGAUguugcugcacuuGAUGCCa -3'
miRNA:   3'- cAUGCG----UGCGGuUCGUACUG------------UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.