Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14690 | 5' | -50.5 | NC_003525.1 | + | 9636 | 0.66 | 0.911724 |
Target: 5'- --uACcGGUGCGGCAGgc-CCGGCAg -3' miRNA: 3'- gauUGuCCGCGUUGUCauuGGUCGUa -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 9509 | 0.66 | 0.904844 |
Target: 5'- -cAACcGGCG-AACGGgGACCGGCAg -3' miRNA: 3'- gaUUGuCCGCgUUGUCaUUGGUCGUa -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 26328 | 0.66 | 0.897665 |
Target: 5'- --uGCuGGCGUGACA--AACCGGCAUc -3' miRNA: 3'- gauUGuCCGCGUUGUcaUUGGUCGUA- -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 28376 | 0.67 | 0.882429 |
Target: 5'- -aAGCAGaGCGUucAACAGUAGCgcaGGCAa -3' miRNA: 3'- gaUUGUC-CGCG--UUGUCAUUGg--UCGUa -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 22278 | 0.68 | 0.83018 |
Target: 5'- gUGGCAGaguGCGUAACAGUuGCCAGg-- -3' miRNA: 3'- gAUUGUC---CGCGUUGUCAuUGGUCgua -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 8387 | 0.69 | 0.769725 |
Target: 5'- uCUGACAGuGCaaaGACGGcAACCAGCAg -3' miRNA: 3'- -GAUUGUC-CGcg-UUGUCaUUGGUCGUa -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 19157 | 0.7 | 0.726132 |
Target: 5'- ----gAGGCGCAACucGGUAACCAGa-- -3' miRNA: 3'- gauugUCCGCGUUG--UCAUUGGUCgua -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 9680 | 0.72 | 0.600189 |
Target: 5'- -aAACAGGUGCGGCAGgc-CCGGUg- -3' miRNA: 3'- gaUUGUCCGCGUUGUCauuGGUCGua -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 59629 | 0.74 | 0.484889 |
Target: 5'- -gGACAGGUgGCGuugauccgcaggcuGCGGUAACCAGCGg -3' miRNA: 3'- gaUUGUCCG-CGU--------------UGUCAUUGGUCGUa -5' |
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14690 | 5' | -50.5 | NC_003525.1 | + | 46959 | 1.07 | 0.003752 |
Target: 5'- gCUAACAGGCGCAACAGUAACCAGCAUa -3' miRNA: 3'- -GAUUGUCCGCGUUGUCAUUGGUCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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