miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14690 5' -50.5 NC_003525.1 + 9636 0.66 0.911724
Target:  5'- --uACcGGUGCGGCAGgc-CCGGCAg -3'
miRNA:   3'- gauUGuCCGCGUUGUCauuGGUCGUa -5'
14690 5' -50.5 NC_003525.1 + 9509 0.66 0.904844
Target:  5'- -cAACcGGCG-AACGGgGACCGGCAg -3'
miRNA:   3'- gaUUGuCCGCgUUGUCaUUGGUCGUa -5'
14690 5' -50.5 NC_003525.1 + 26328 0.66 0.897665
Target:  5'- --uGCuGGCGUGACA--AACCGGCAUc -3'
miRNA:   3'- gauUGuCCGCGUUGUcaUUGGUCGUA- -5'
14690 5' -50.5 NC_003525.1 + 28376 0.67 0.882429
Target:  5'- -aAGCAGaGCGUucAACAGUAGCgcaGGCAa -3'
miRNA:   3'- gaUUGUC-CGCG--UUGUCAUUGg--UCGUa -5'
14690 5' -50.5 NC_003525.1 + 22278 0.68 0.83018
Target:  5'- gUGGCAGaguGCGUAACAGUuGCCAGg-- -3'
miRNA:   3'- gAUUGUC---CGCGUUGUCAuUGGUCgua -5'
14690 5' -50.5 NC_003525.1 + 8387 0.69 0.769725
Target:  5'- uCUGACAGuGCaaaGACGGcAACCAGCAg -3'
miRNA:   3'- -GAUUGUC-CGcg-UUGUCaUUGGUCGUa -5'
14690 5' -50.5 NC_003525.1 + 19157 0.7 0.726132
Target:  5'- ----gAGGCGCAACucGGUAACCAGa-- -3'
miRNA:   3'- gauugUCCGCGUUG--UCAUUGGUCgua -5'
14690 5' -50.5 NC_003525.1 + 9680 0.72 0.600189
Target:  5'- -aAACAGGUGCGGCAGgc-CCGGUg- -3'
miRNA:   3'- gaUUGUCCGCGUUGUCauuGGUCGua -5'
14690 5' -50.5 NC_003525.1 + 59629 0.74 0.484889
Target:  5'- -gGACAGGUgGCGuugauccgcaggcuGCGGUAACCAGCGg -3'
miRNA:   3'- gaUUGUCCG-CGU--------------UGUCAUUGGUCGUa -5'
14690 5' -50.5 NC_003525.1 + 46959 1.07 0.003752
Target:  5'- gCUAACAGGCGCAACAGUAACCAGCAUa -3'
miRNA:   3'- -GAUUGUCCGCGUUGUCAUUGGUCGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.