miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14712 5' -54.4 NC_003529.1 + 62986 0.66 0.951919
Target:  5'- cGUCGACGCgacauacguuacagaGCaGGACGCgCGAUUCGg -3'
miRNA:   3'- -CAGCUGCGa--------------CGcUCUGUG-GUUGAGCg -5'
14712 5' -54.4 NC_003529.1 + 109138 0.66 0.95151
Target:  5'- aUgGAUGCUGcCGAcGGCAUCAAacugUCGCa -3'
miRNA:   3'- cAgCUGCGAC-GCU-CUGUGGUUg---AGCG- -5'
14712 5' -54.4 NC_003529.1 + 65216 0.67 0.938146
Target:  5'- gGUCGACaaCUGCuaaGCACCAAC-CGCa -3'
miRNA:   3'- -CAGCUGc-GACGcucUGUGGUUGaGCG- -5'
14712 5' -54.4 NC_003529.1 + 153879 0.67 0.928043
Target:  5'- uUCGACGCaUGUGuaAGACGuCCauuAugUCGCa -3'
miRNA:   3'- cAGCUGCG-ACGC--UCUGU-GG---UugAGCG- -5'
14712 5' -54.4 NC_003529.1 + 58409 0.67 0.927512
Target:  5'- cGUCGGCGauuuggGCaacauuGAGGCGaaaguguCCAACUCGCu -3'
miRNA:   3'- -CAGCUGCga----CG------CUCUGU-------GGUUGAGCG- -5'
14712 5' -54.4 NC_003529.1 + 121055 0.67 0.922629
Target:  5'- aUCGuACGUcGUGcuGCAuCCAACUCGCg -3'
miRNA:   3'- cAGC-UGCGaCGCucUGU-GGUUGAGCG- -5'
14712 5' -54.4 NC_003529.1 + 38073 0.67 0.922629
Target:  5'- aGUUGGCGCauuUGCGucgaGGACagcucACUAAUUCGCg -3'
miRNA:   3'- -CAGCUGCG---ACGC----UCUG-----UGGUUGAGCG- -5'
14712 5' -54.4 NC_003529.1 + 31924 0.67 0.922629
Target:  5'- -gCGAUcugaGC-GCuAGACGCCAGCUCGUu -3'
miRNA:   3'- caGCUG----CGaCGcUCUGUGGUUGAGCG- -5'
14712 5' -54.4 NC_003529.1 + 112909 0.67 0.922629
Target:  5'- aUgGACaCUGCGGcGGCGCCGACUaaugGCa -3'
miRNA:   3'- cAgCUGcGACGCU-CUGUGGUUGAg---CG- -5'
14712 5' -54.4 NC_003529.1 + 74241 0.67 0.916974
Target:  5'- -gUGACGCUGCGcGAU-CCAgaACUCGa -3'
miRNA:   3'- caGCUGCGACGCuCUGuGGU--UGAGCg -5'
14712 5' -54.4 NC_003529.1 + 142304 0.68 0.885138
Target:  5'- uGUCGGCaGCguaacGCGAcGACACUAcacaacGCUUGCg -3'
miRNA:   3'- -CAGCUG-CGa----CGCU-CUGUGGU------UGAGCG- -5'
14712 5' -54.4 NC_003529.1 + 94961 0.69 0.870797
Target:  5'- uGUUGAgGCUGU-AGGCGCCGACg-GCu -3'
miRNA:   3'- -CAGCUgCGACGcUCUGUGGUUGagCG- -5'
14712 5' -54.4 NC_003529.1 + 94088 0.69 0.839572
Target:  5'- cGUCGACGacgUGCGAGcCGCCuuCgaggcagCGCa -3'
miRNA:   3'- -CAGCUGCg--ACGCUCuGUGGuuGa------GCG- -5'
14712 5' -54.4 NC_003529.1 + 142389 0.7 0.831272
Target:  5'- cGUCGuuuCGauucGCGGuGCACCAGCUUGCa -3'
miRNA:   3'- -CAGCu--GCga--CGCUcUGUGGUUGAGCG- -5'
14712 5' -54.4 NC_003529.1 + 5938 0.7 0.822791
Target:  5'- cUCGACGCUaGCgGAGGCAgCAGCUg-- -3'
miRNA:   3'- cAGCUGCGA-CG-CUCUGUgGUUGAgcg -5'
14712 5' -54.4 NC_003529.1 + 115829 0.71 0.749351
Target:  5'- -aCGAUGCUGCcacGGCACgCGACUgGCa -3'
miRNA:   3'- caGCUGCGACGcu-CUGUG-GUUGAgCG- -5'
14712 5' -54.4 NC_003529.1 + 65612 0.72 0.699777
Target:  5'- -aCGACGCaGCGcGACACCAACgguuUCGg -3'
miRNA:   3'- caGCUGCGaCGCuCUGUGGUUG----AGCg -5'
14712 5' -54.4 NC_003529.1 + 101545 0.73 0.628205
Target:  5'- -cCGACGCauucGCGAGcCGCCAACUCu- -3'
miRNA:   3'- caGCUGCGa---CGCUCuGUGGUUGAGcg -5'
14712 5' -54.4 NC_003529.1 + 40739 0.76 0.497408
Target:  5'- uUCGugGCUGCGAGugcucaACAUgAugUCGCc -3'
miRNA:   3'- cAGCugCGACGCUC------UGUGgUugAGCG- -5'
14712 5' -54.4 NC_003529.1 + 124494 0.79 0.36388
Target:  5'- --aGACGUUGCGAuGGCACagCGACUCGCa -3'
miRNA:   3'- cagCUGCGACGCU-CUGUG--GUUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.