miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1493 3' -55.1 NC_001335.1 + 29299 1.12 0.000513
Target:  5'- uGGCUCAGCGAUGAAGCAUCGCCGCACg -3'
miRNA:   3'- -CCGAGUCGCUACUUCGUAGCGGCGUG- -5'
1493 3' -55.1 NC_001335.1 + 24257 0.67 0.611732
Target:  5'- cGcCUCAGCGAU--AGCcUCGUCGCGg -3'
miRNA:   3'- cC-GAGUCGCUAcuUCGuAGCGGCGUg -5'
1493 3' -55.1 NC_001335.1 + 4091 0.68 0.556469
Target:  5'- aGGCagccggCGGCGAUGcaAAGCAgcUCGgCCGCGu -3'
miRNA:   3'- -CCGa-----GUCGCUAC--UUCGU--AGC-GGCGUg -5'
1493 3' -55.1 NC_001335.1 + 6947 0.68 0.530428
Target:  5'- cGGCUCaAGgGcUGggGCAaggauccguucacCGCCGCGCc -3'
miRNA:   3'- -CCGAG-UCgCuACuuCGUa------------GCGGCGUG- -5'
1493 3' -55.1 NC_001335.1 + 16072 0.69 0.492252
Target:  5'- gGGCUCggagaucuaGGCGAUGAcgccgagaaGGCGUCGUCucaaGUACa -3'
miRNA:   3'- -CCGAG---------UCGCUACU---------UCGUAGCGG----CGUG- -5'
1493 3' -55.1 NC_001335.1 + 46250 0.69 0.481871
Target:  5'- cGC-CAGCGcGUGGuuCAUCGCCGCGu -3'
miRNA:   3'- cCGaGUCGC-UACUucGUAGCGGCGUg -5'
1493 3' -55.1 NC_001335.1 + 46169 0.66 0.67187
Target:  5'- -cCUCGGCGAUGAucccaGGCAggUUGCCuagaaccaccgccaaGCACa -3'
miRNA:   3'- ccGAGUCGCUACU-----UCGU--AGCGG---------------CGUG- -5'
1493 3' -55.1 NC_001335.1 + 38013 0.68 0.589508
Target:  5'- aGCUCGGCGGUGAucGUGUCGaguucucccUCGCAg -3'
miRNA:   3'- cCGAGUCGCUACUu-CGUAGC---------GGCGUg -5'
1493 3' -55.1 NC_001335.1 + 49464 0.69 0.522915
Target:  5'- uGGCUCGGUGGgcagccucgcgGAAGgucagccCGUCGUCGUACg -3'
miRNA:   3'- -CCGAGUCGCUa----------CUUC-------GUAGCGGCGUG- -5'
1493 3' -55.1 NC_001335.1 + 23970 0.71 0.39286
Target:  5'- aGGCUCuGUGAUcGAcauccucAGCGUCGCCGgAa -3'
miRNA:   3'- -CCGAGuCGCUA-CU-------UCGUAGCGGCgUg -5'
1493 3' -55.1 NC_001335.1 + 2284 0.75 0.232636
Target:  5'- gGGC-CAGCGAggucGAGGCugaacuUCGCCGCGa -3'
miRNA:   3'- -CCGaGUCGCUa---CUUCGu-----AGCGGCGUg -5'
1493 3' -55.1 NC_001335.1 + 27673 0.66 0.678514
Target:  5'- aGCcgCAGCaGGUGcAGCA--GCCGCACu -3'
miRNA:   3'- cCGa-GUCG-CUACuUCGUagCGGCGUG- -5'
1493 3' -55.1 NC_001335.1 + 46117 0.72 0.366817
Target:  5'- uGCUCGGCGAUGug----CGCUGCGCu -3'
miRNA:   3'- cCGAGUCGCUACuucguaGCGGCGUG- -5'
1493 3' -55.1 NC_001335.1 + 18214 0.68 0.567431
Target:  5'- cGGCUCuGuCGAUGAGGCgcuGUCGaucaaggaCCGCGa -3'
miRNA:   3'- -CCGAGuC-GCUACUUCG---UAGC--------GGCGUg -5'
1493 3' -55.1 NC_001335.1 + 39101 0.66 0.70053
Target:  5'- -uCUCGGUGAUGAGuagcGCAUCGUgGCc- -3'
miRNA:   3'- ccGAGUCGCUACUU----CGUAGCGgCGug -5'
1493 3' -55.1 NC_001335.1 + 27164 0.66 0.667433
Target:  5'- aGGCUCAG-GGUGGcGGCAagGCCGa-- -3'
miRNA:   3'- -CCGAGUCgCUACU-UCGUagCGGCgug -5'
1493 3' -55.1 NC_001335.1 + 9207 0.68 0.582866
Target:  5'- aGCUCGGCGGucgccugcaucaacaUGAGGaugcgCGCCGcCGCg -3'
miRNA:   3'- cCGAGUCGCU---------------ACUUCgua--GCGGC-GUG- -5'
1493 3' -55.1 NC_001335.1 + 26793 0.68 0.589508
Target:  5'- gGGUUCGGgagacaacCGAUGAAGCA-CGgaggaCCGCGCu -3'
miRNA:   3'- -CCGAGUC--------GCUACUUCGUaGC-----GGCGUG- -5'
1493 3' -55.1 NC_001335.1 + 31875 0.67 0.611732
Target:  5'- cGGCU-GGCuGAccGggGC-UUGCCGCGCa -3'
miRNA:   3'- -CCGAgUCG-CUa-CuuCGuAGCGGCGUG- -5'
1493 3' -55.1 NC_001335.1 + 29071 0.67 0.622876
Target:  5'- cGGCUgagcaagaagcUGGCGAUgGAAGC-UgGCCGCAa -3'
miRNA:   3'- -CCGA-----------GUCGCUA-CUUCGuAgCGGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.