miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1539 3' -44.9 NC_001347.2 + 228368 0.66 1
Target:  5'- -gGUGGAuGugGC-GGGGUgcGGCGGUu -3'
miRNA:   3'- uaUAUUU-UugCGuCCCCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 142449 0.66 1
Target:  5'- ------cGGCGuCGGGGGU--GGCGGUc -3'
miRNA:   3'- uauauuuUUGC-GUCCCCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 133583 0.66 0.999999
Target:  5'- -aGUGAAAACGUGGGGGgacAG-AGUu -3'
miRNA:   3'- uaUAUUUUUGCGUCCCCaaaUCgUCG- -5'
1539 3' -44.9 NC_001347.2 + 144612 0.67 0.999999
Target:  5'- ---gAAAGugGUAGGGGg--AGgGGUg -3'
miRNA:   3'- uauaUUUUugCGUCCCCaaaUCgUCG- -5'
1539 3' -44.9 NC_001347.2 + 74516 0.66 0.999999
Target:  5'- -----uGAGCGCgcgacagauauaGGGGGUgaUAGCGGUg -3'
miRNA:   3'- uauauuUUUGCG------------UCCCCAa-AUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 113113 0.67 0.999998
Target:  5'- --cUGGAAGCGCAGGcGGcUguacaggagaUGGCGGUu -3'
miRNA:   3'- uauAUUUUUGCGUCC-CCaA----------AUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 29733 0.67 0.999998
Target:  5'- cUGUuguGGugGCuGGGaGUggUGGCGGCa -3'
miRNA:   3'- uAUAuu-UUugCGuCCC-CAa-AUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 219048 0.67 0.999997
Target:  5'- uUGUAGAAACGguGGuugcuGGUgcaguuGCAGUa -3'
miRNA:   3'- uAUAUUUUUGCguCC-----CCAaau---CGUCG- -5'
1539 3' -44.9 NC_001347.2 + 158366 0.67 0.999997
Target:  5'- ---------aGCGGGuGGUgcGGCAGCg -3'
miRNA:   3'- uauauuuuugCGUCC-CCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 173661 0.67 0.999997
Target:  5'- ---gGAGGugGCGGcGGU--GGCGGCa -3'
miRNA:   3'- uauaUUUUugCGUCcCCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 155425 0.67 0.999997
Target:  5'- --uUGAGGACGCGGaaaaaagaauguccuGGGcuaAGCAGCg -3'
miRNA:   3'- uauAUUUUUGCGUC---------------CCCaaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 36364 0.67 0.999996
Target:  5'- cGUGUucaguuGGGCgGCAGGGGcaugcggccUUAGCGGCu -3'
miRNA:   3'- -UAUAuu----UUUG-CGUCCCCa--------AAUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 85497 0.67 0.999996
Target:  5'- -------cGCGCAGcGGUUcgGGCGGCu -3'
miRNA:   3'- uauauuuuUGCGUCcCCAAa-UCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 137370 0.67 0.999994
Target:  5'- -gAUAAGGugGCguaccuAGGGGUgUGGCuGUa -3'
miRNA:   3'- uaUAUUUUugCG------UCCCCAaAUCGuCG- -5'
1539 3' -44.9 NC_001347.2 + 135306 0.67 0.999994
Target:  5'- ---gGGGAGCaGCGGGGGag-GGgAGCg -3'
miRNA:   3'- uauaUUUUUG-CGUCCCCaaaUCgUCG- -5'
1539 3' -44.9 NC_001347.2 + 37300 0.68 0.999992
Target:  5'- -----uAAGCGCGGaGGUUugucUGGCGGCu -3'
miRNA:   3'- uauauuUUUGCGUCcCCAA----AUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 229526 0.68 0.999989
Target:  5'- uGUGUcgGGGCGCGGcGGGU--GGguGUg -3'
miRNA:   3'- -UAUAuuUUUGCGUC-CCCAaaUCguCG- -5'
1539 3' -44.9 NC_001347.2 + 7886 0.68 0.999989
Target:  5'- -gGUAGuGAC-CAGGuGGUcagUGGCGGCg -3'
miRNA:   3'- uaUAUUuUUGcGUCC-CCAa--AUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 39511 0.68 0.999989
Target:  5'- ----cAAGGgGCGGGGGgc--GCGGCg -3'
miRNA:   3'- uauauUUUUgCGUCCCCaaauCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 132830 0.68 0.999989
Target:  5'- gGUGUuuuuACGCAGguGGGUgaGGCAGUu -3'
miRNA:   3'- -UAUAuuuuUGCGUC--CCCAaaUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.