miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1542 5' -53.2 NC_001347.2 + 224939 0.68 0.972711
Target:  5'- uGUGUUUCA--AGUuguUCGCAUACGUCg -3'
miRNA:   3'- gCACAAGGUguUCGu--GGCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 222664 0.68 0.972711
Target:  5'- aGUGUUCCAUAAaaGCCGgGCGC-UCc -3'
miRNA:   3'- gCACAAGGUGUUcgUGGCgUGUGcAG- -5'
1542 5' -53.2 NC_001347.2 + 221894 1.11 0.00609
Target:  5'- cCGUGUUCCACAAGCACCGCACACGUCa -3'
miRNA:   3'- -GCACAAGGUGUUCGUGGCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 209926 0.66 0.98574
Target:  5'- uGUG-UCCAaccguGGCACCGUAgGCGg- -3'
miRNA:   3'- gCACaAGGUgu---UCGUGGCGUgUGCag -5'
1542 5' -53.2 NC_001347.2 + 208629 0.69 0.952706
Target:  5'- uCGggcgUCCACAGGUACCGCgucugugaGCGCGaUCc -3'
miRNA:   3'- -GCaca-AGGUGUUCGUGGCG--------UGUGC-AG- -5'
1542 5' -53.2 NC_001347.2 + 189431 0.69 0.934928
Target:  5'- gGUGcUggGCAAGCgagucgcgacGCCGCACGCGUCc -3'
miRNA:   3'- gCACaAggUGUUCG----------UGGCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 187937 0.66 0.98574
Target:  5'- aCGUGgacagcuucCCACAGuCGgCGCACACGUUu -3'
miRNA:   3'- -GCACaa-------GGUGUUcGUgGCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 183688 0.68 0.966885
Target:  5'- gCGUG---CGCAGGUcCCGCaACACGUCg -3'
miRNA:   3'- -GCACaagGUGUUCGuGGCG-UGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 179667 0.66 0.98574
Target:  5'- aCGUGUU--GCGGGCAauagCGCACACGa- -3'
miRNA:   3'- -GCACAAggUGUUCGUg---GCGUGUGCag -5'
1542 5' -53.2 NC_001347.2 + 161929 0.66 0.988658
Target:  5'- aGUGUcuccagcggcuuuUCCAUcAGCGCC-UugGCGUCg -3'
miRNA:   3'- gCACA-------------AGGUGuUCGUGGcGugUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 161645 0.66 0.988658
Target:  5'- -aUGUcgacCCGCGGcguggacGCGCCGUugGCGUCg -3'
miRNA:   3'- gcACAa---GGUGUU-------CGUGGCGugUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 158904 0.7 0.919138
Target:  5'- gGUGUuggCCaccaugcugaGCAAGUACaCGCGCAUGUCc -3'
miRNA:   3'- gCACAa--GG----------UGUUCGUG-GCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 157134 0.7 0.919138
Target:  5'- --aGUUCCAcCAGGCuCUGCGC-CGUCu -3'
miRNA:   3'- gcaCAAGGU-GUUCGuGGCGUGuGCAG- -5'
1542 5' -53.2 NC_001347.2 + 146096 0.66 0.98574
Target:  5'- gGUGgUCUACAAGCGCaacaucguggCGCACACc-- -3'
miRNA:   3'- gCACaAGGUGUUCGUG----------GCGUGUGcag -5'
1542 5' -53.2 NC_001347.2 + 123483 0.67 0.974821
Target:  5'- uGUGUUCCACuccaucacacCACCGC-CACGa- -3'
miRNA:   3'- gCACAAGGUGuuc-------GUGGCGuGUGCag -5'
1542 5' -53.2 NC_001347.2 + 114416 0.66 0.98734
Target:  5'- cCGUGUUCgAUGAaacgcGCGCCGC-C-CGUCu -3'
miRNA:   3'- -GCACAAGgUGUU-----CGUGGCGuGuGCAG- -5'
1542 5' -53.2 NC_001347.2 + 112738 0.66 0.99132
Target:  5'- aCGUagUCCGCAAagugacGUGCCGCcaACugGUCg -3'
miRNA:   3'- -GCAcaAGGUGUU------CGUGGCG--UGugCAG- -5'
1542 5' -53.2 NC_001347.2 + 108768 0.69 0.94428
Target:  5'- uCGUGUUucCCACcaggacguGGCACUGCgGCACGUg -3'
miRNA:   3'- -GCACAA--GGUGu-------UCGUGGCG-UGUGCAg -5'
1542 5' -53.2 NC_001347.2 + 105950 0.68 0.959875
Target:  5'- -cUGgaCCGCGAGCgcagcgucggcgaGCCGCGCACGcCc -3'
miRNA:   3'- gcACaaGGUGUUCG-------------UGGCGUGUGCaG- -5'
1542 5' -53.2 NC_001347.2 + 91499 0.74 0.726449
Target:  5'- cCGUGUUCCu--GGUGCCGCG-ACGUCa -3'
miRNA:   3'- -GCACAAGGuguUCGUGGCGUgUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.