miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1550 5' -40.2 NC_001347.2 + 147576 0.66 1
Target:  5'- cCGGGAAcucggccuACGAGUACGUGga-CUACc -3'
miRNA:   3'- uGCCUUU--------UGUUUAUGUACauaGAUGc -5'
1550 5' -40.2 NC_001347.2 + 41924 0.68 1
Target:  5'- cACGGAcacGACAAaugcAUGCAaacuucucauuuauUGUGUCUACu -3'
miRNA:   3'- -UGCCUu--UUGUU----UAUGU--------------ACAUAGAUGc -5'
1550 5' -40.2 NC_001347.2 + 6689 0.69 1
Target:  5'- gGCGGAAacacaGACGAAUACucggGgggCUGCGa -3'
miRNA:   3'- -UGCCUU-----UUGUUUAUGua--CauaGAUGC- -5'
1550 5' -40.2 NC_001347.2 + 48542 0.68 1
Target:  5'- -aGGAAGGCGAGaACGUGU-UUUGCa -3'
miRNA:   3'- ugCCUUUUGUUUaUGUACAuAGAUGc -5'
1550 5' -40.2 NC_001347.2 + 57033 0.68 1
Target:  5'- -aGGAGGACGGAUACuuauAUGUGuuguuauccuccUCUACa -3'
miRNA:   3'- ugCCUUUUGUUUAUG----UACAU------------AGAUGc -5'
1550 5' -40.2 NC_001347.2 + 96134 0.69 1
Target:  5'- uCGGcAAGACGcuuUACGUGUAUCUGg- -3'
miRNA:   3'- uGCC-UUUUGUuu-AUGUACAUAGAUgc -5'
1550 5' -40.2 NC_001347.2 + 150301 0.7 1
Target:  5'- gACGGAcAGCAGAUcc--GUAUCUACa -3'
miRNA:   3'- -UGCCUuUUGUUUAuguaCAUAGAUGc -5'
1550 5' -40.2 NC_001347.2 + 221103 0.73 1
Target:  5'- gGCGGcauACGAc-GCAUGUAUCUGCu -3'
miRNA:   3'- -UGCCuuuUGUUuaUGUACAUAGAUGc -5'
1550 5' -40.2 NC_001347.2 + 26252 0.71 1
Target:  5'- gGCGGAccGCGAuuguCAUgcGUGUCUACGg -3'
miRNA:   3'- -UGCCUuuUGUUuau-GUA--CAUAGAUGC- -5'
1550 5' -40.2 NC_001347.2 + 18256 0.67 1
Target:  5'- cUGGu--GCGAAUAUGUGUAUCgGCa -3'
miRNA:   3'- uGCCuuuUGUUUAUGUACAUAGaUGc -5'
1550 5' -40.2 NC_001347.2 + 75121 0.67 1
Target:  5'- cGCGGAAggUAGuGUACAUGUgcaccGUCUccuCGa -3'
miRNA:   3'- -UGCCUUuuGUU-UAUGUACA-----UAGAu--GC- -5'
1550 5' -40.2 NC_001347.2 + 133594 0.66 1
Target:  5'- -gGGggGACAGAguuccaaACAcGUGUCUAUc -3'
miRNA:   3'- ugCCuuUUGUUUa------UGUaCAUAGAUGc -5'
1550 5' -40.2 NC_001347.2 + 49189 0.66 1
Target:  5'- uCGGGGAACAGG-ACGcUGaacAUCUGCGg -3'
miRNA:   3'- uGCCUUUUGUUUaUGU-ACa--UAGAUGC- -5'
1550 5' -40.2 NC_001347.2 + 784 0.66 1
Target:  5'- cACGGgcGACGAAgGCGUccgcGUGUCUAa- -3'
miRNA:   3'- -UGCCuuUUGUUUaUGUA----CAUAGAUgc -5'
1550 5' -40.2 NC_001347.2 + 210671 0.66 1
Target:  5'- cUGGAAAAgGAGUAagaAUGgcaGUCUACa -3'
miRNA:   3'- uGCCUUUUgUUUAUg--UACa--UAGAUGc -5'
1550 5' -40.2 NC_001347.2 + 149174 0.66 1
Target:  5'- uACGGGAcGCGAcccGUGCccgauuugcaguGUGUGUCUAUc -3'
miRNA:   3'- -UGCCUUuUGUU---UAUG------------UACAUAGAUGc -5'
1550 5' -40.2 NC_001347.2 + 12454 0.66 1
Target:  5'- cGCGG----CGAAUGCGUGccUCUGCGc -3'
miRNA:   3'- -UGCCuuuuGUUUAUGUACauAGAUGC- -5'
1550 5' -40.2 NC_001347.2 + 99026 0.66 1
Target:  5'- gACGuuGAGCGAGUugAUGUAg--ACGg -3'
miRNA:   3'- -UGCcuUUUGUUUAugUACAUagaUGC- -5'
1550 5' -40.2 NC_001347.2 + 158647 0.67 1
Target:  5'- uUGGAAAGCGAGgacgGCGccccgcUGUGUCgggGCGc -3'
miRNA:   3'- uGCCUUUUGUUUa---UGU------ACAUAGa--UGC- -5'
1550 5' -40.2 NC_001347.2 + 204112 1.12 0.114224
Target:  5'- cACGGAAAACAAAUACAUGUAUCUACGa -3'
miRNA:   3'- -UGCCUUUUGUUUAUGUACAUAGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.