miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 199077 1.13 0.004455
Target:  5'- gAGAAAAUGAAGCGCUAGCGCGGCCGCa -3'
miRNA:   3'- -UCUUUUACUUCGCGAUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 140699 0.82 0.366624
Target:  5'- ----cAUGuuGGGCGCUAGCGUGGCCGUa -3'
miRNA:   3'- ucuuuUAC--UUCGCGAUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 37944 0.82 0.366624
Target:  5'- cGGGugcAGGUGcAGCGCgucccAGCGCGGCCGCu -3'
miRNA:   3'- -UCU---UUUACuUCGCGa----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 173721 0.78 0.519814
Target:  5'- cGGAAAAUGAgcAGCGgUGGCgGCGGCgGUg -3'
miRNA:   3'- -UCUUUUACU--UCGCgAUCG-CGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 187336 0.78 0.549579
Target:  5'- cGAGGAguucGAGGUGCguuGCGUGGCCGUg -3'
miRNA:   3'- uCUUUUa---CUUCGCGau-CGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 19337 0.75 0.712323
Target:  5'- cAGAGAAaGAGGC-CUgguuacAGCGCGGCCGg -3'
miRNA:   3'- -UCUUUUaCUUCGcGA------UCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 99983 0.75 0.720295
Target:  5'- ------cGAAGCGCcaucaugacgcgGGCGCGGUCGCg -3'
miRNA:   3'- ucuuuuaCUUCGCGa-----------UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 178120 0.74 0.761235
Target:  5'- aGGAAacuGAUGAAGCGCggAGC-CaGGCUGCg -3'
miRNA:   3'- -UCUU---UUACUUCGCGa-UCGcG-CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 201805 0.73 0.807279
Target:  5'- -------aGAGCGCUGGC-CGGCUGCa -3'
miRNA:   3'- ucuuuuacUUCGCGAUCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 174877 0.73 0.824641
Target:  5'- gAGAcgguAAUGAGGCGCUGaCGaCGGUCGUc -3'
miRNA:   3'- -UCUu---UUACUUCGCGAUcGC-GCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 153218 0.72 0.841301
Target:  5'- cAGGucGUGcAGCGUgaGGCGCGGgCGCg -3'
miRNA:   3'- -UCUuuUACuUCGCGa-UCGCGCCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 52067 0.72 0.841301
Target:  5'- aGGAGGAgGAGGCGUc--CGCGGcCCGCg -3'
miRNA:   3'- -UCUUUUaCUUCGCGaucGCGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 173952 0.72 0.841301
Target:  5'- aAGAAGcaaAAGUGCggcuagAGCGCGGgCCGCg -3'
miRNA:   3'- -UCUUUuacUUCGCGa-----UCGCGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 2016 0.72 0.849348
Target:  5'- cGGAGAcgGAGGcCGCcGGCGgGGaCGCg -3'
miRNA:   3'- -UCUUUuaCUUC-GCGaUCGCgCCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 68216 0.72 0.857198
Target:  5'- cAGAcGGcgGAAGCGgUAGaCGCGgcGCCGCa -3'
miRNA:   3'- -UCU-UUuaCUUCGCgAUC-GCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 187754 0.71 0.885804
Target:  5'- gGGAGGAgcUGGAGCGCaaaugucUGGCGCGcauucaggagcGCUGCa -3'
miRNA:   3'- -UCUUUU--ACUUCGCG-------AUCGCGC-----------CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 154681 0.71 0.886494
Target:  5'- uGAuGAUGAGGUGCUgAGCGCcgcacgGGgCGCg -3'
miRNA:   3'- uCUuUUACUUCGCGA-UCGCG------CCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 115508 0.71 0.886494
Target:  5'- cGAAAccgGUGccggccGCGCUAGCG-GGCUGCa -3'
miRNA:   3'- uCUUU---UACuu----CGCGAUCGCgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 105535 0.71 0.886494
Target:  5'- gGGAGAAgggcGAcGCGCUAuGCGUGcuGCCGCc -3'
miRNA:   3'- -UCUUUUa---CUuCGCGAU-CGCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 68736 0.71 0.899808
Target:  5'- cGGAGGccGUGGAGCG--AGUGCcGCCGCa -3'
miRNA:   3'- -UCUUU--UACUUCGCgaUCGCGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.