miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15642 5' -49.6 NC_004062.1 + 12952 0.97 0.045108
Target:  5'- aGUCCGUAUCCAACCAGAUCUCU-CUAc -3'
miRNA:   3'- -CAGGCAUAGGUUGGUCUAGAGAuGAU- -5'
15642 5' -49.6 NC_004062.1 + 13064 0.72 0.863995
Target:  5'- cUCCG-AUCCGACCuuuUCUCUACUc -3'
miRNA:   3'- cAGGCaUAGGUUGGucuAGAGAUGAu -5'
15642 5' -49.6 NC_004062.1 + 16702 0.67 0.986963
Target:  5'- uUCCcaagcuucAUCUAACCAGGUUUCUACa- -3'
miRNA:   3'- cAGGca------UAGGUUGGUCUAGAGAUGau -5'
15642 5' -49.6 NC_004062.1 + 25820 0.67 0.981084
Target:  5'- uUgCGUAaacaauuaacaUCCAGCCAGAUUaaguugUCUACUAg -3'
miRNA:   3'- cAgGCAU-----------AGGUUGGUCUAG------AGAUGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.