miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15658 3' -56 NC_004065.1 + 111938 0.66 0.953213
Target:  5'- -cUCGC-CUUUCGGGAuccagaagGaCGCCCUCAa -3'
miRNA:   3'- guAGCGuGAGAGUCCU--------C-GUGGGAGUg -5'
15658 3' -56 NC_004065.1 + 198799 0.66 0.953213
Target:  5'- -uUCGCAaca-CAGGAGCGCgUUCGCc -3'
miRNA:   3'- guAGCGUgagaGUCCUCGUGgGAGUG- -5'
15658 3' -56 NC_004065.1 + 13097 0.66 0.944927
Target:  5'- uCAUCGCGuCUCUCcuGAGCGCUgUUg- -3'
miRNA:   3'- -GUAGCGU-GAGAGucCUCGUGGgAGug -5'
15658 3' -56 NC_004065.1 + 130252 0.66 0.940444
Target:  5'- uCGUCGCuGC-CUCGGGgcGGUAUCCUcCGCa -3'
miRNA:   3'- -GUAGCG-UGaGAGUCC--UCGUGGGA-GUG- -5'
15658 3' -56 NC_004065.1 + 229473 0.66 0.935733
Target:  5'- cCGUUGCGCgaacaGGGGGCGCUCgCACa -3'
miRNA:   3'- -GUAGCGUGagag-UCCUCGUGGGaGUG- -5'
15658 3' -56 NC_004065.1 + 87531 0.66 0.935733
Target:  5'- aUAUUGCGa--UCAGG-GCGCCCUCu- -3'
miRNA:   3'- -GUAGCGUgagAGUCCuCGUGGGAGug -5'
15658 3' -56 NC_004065.1 + 80959 0.67 0.92562
Target:  5'- ---gGCAC-CUCGGGGGaGCCCUcCACc -3'
miRNA:   3'- guagCGUGaGAGUCCUCgUGGGA-GUG- -5'
15658 3' -56 NC_004065.1 + 37330 0.68 0.876034
Target:  5'- gAUCuGCGCUCUCGGGGGguUUCUgCAUu -3'
miRNA:   3'- gUAG-CGUGAGAGUCCUCguGGGA-GUG- -5'
15658 3' -56 NC_004065.1 + 19347 0.68 0.861457
Target:  5'- aCAUCGCGgagguCUCUCGGGAGgcgucuCGgUCUCGCg -3'
miRNA:   3'- -GUAGCGU-----GAGAGUCCUC------GUgGGAGUG- -5'
15658 3' -56 NC_004065.1 + 108394 0.68 0.861457
Target:  5'- --aCGCGCUCaacgccauccUCGGGGGCAUCCUg-- -3'
miRNA:   3'- guaGCGUGAG----------AGUCCUCGUGGGAgug -5'
15658 3' -56 NC_004065.1 + 127182 0.69 0.829953
Target:  5'- -cUCGCuCUUUCAGGcGgGCCCUCGg -3'
miRNA:   3'- guAGCGuGAGAGUCCuCgUGGGAGUg -5'
15658 3' -56 NC_004065.1 + 106263 0.7 0.81313
Target:  5'- uCGUCGUACUCgacCAGGgugcuGGCGCagaaCUCGCa -3'
miRNA:   3'- -GUAGCGUGAGa--GUCC-----UCGUGg---GAGUG- -5'
15658 3' -56 NC_004065.1 + 123473 0.7 0.804477
Target:  5'- uGUCGCuucCUC-CAGGAa-GCCCUCACg -3'
miRNA:   3'- gUAGCGu--GAGaGUCCUcgUGGGAGUG- -5'
15658 3' -56 NC_004065.1 + 47154 0.7 0.786724
Target:  5'- cCAUCGCGgccccCUC-CAGGccguGCAUCCUCGCc -3'
miRNA:   3'- -GUAGCGU-----GAGaGUCCu---CGUGGGAGUG- -5'
15658 3' -56 NC_004065.1 + 2339 0.7 0.784918
Target:  5'- gCAUaCGCGCgcagCgcgugaaacgaaCAGGAGCugCCUCGCa -3'
miRNA:   3'- -GUA-GCGUGa---Ga-----------GUCCUCGugGGAGUG- -5'
15658 3' -56 NC_004065.1 + 63494 0.7 0.777642
Target:  5'- cCGUCGCGCagC-CAGGuGCggauggccucGCCCUCGCg -3'
miRNA:   3'- -GUAGCGUGa-GaGUCCuCG----------UGGGAGUG- -5'
15658 3' -56 NC_004065.1 + 127706 0.71 0.749675
Target:  5'- --aCGCACgugUUUCGGGGGCugCuCUCGCu -3'
miRNA:   3'- guaGCGUG---AGAGUCCUCGugG-GAGUG- -5'
15658 3' -56 NC_004065.1 + 31951 0.71 0.740141
Target:  5'- uCAUCgGCACgCUCGGGcaccgacGCACCUUCGCu -3'
miRNA:   3'- -GUAG-CGUGaGAGUCCu------CGUGGGAGUG- -5'
15658 3' -56 NC_004065.1 + 43102 0.73 0.65128
Target:  5'- -cUCGCGCUCUCcgAGGGGUcucgaccgACCCUcCGCa -3'
miRNA:   3'- guAGCGUGAGAG--UCCUCG--------UGGGA-GUG- -5'
15658 3' -56 NC_004065.1 + 141572 0.76 0.447373
Target:  5'- ---gGCGCUCUUGGGcAGCGCCCUgACg -3'
miRNA:   3'- guagCGUGAGAGUCC-UCGUGGGAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.