miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15659 3' -48.5 NC_004065.1 + 200636 0.72 0.982498
Target:  5'- --gAUGGCGu---CGCGCUCGAGGCGa -3'
miRNA:   3'- agaUGCCGUuuuuGCGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 67283 0.73 0.970113
Target:  5'- --cACGGCGGAGACGCaggACCUGggGgGc -3'
miRNA:   3'- agaUGCCGUUUUUGCG---UGGGCuuUgC- -5'
15659 3' -48.5 NC_004065.1 + 110183 0.73 0.970113
Target:  5'- cUCUGCGGCGGccgcGACGCGCCgccgcccguCGAGAgGg -3'
miRNA:   3'- -AGAUGCCGUUu---UUGCGUGG---------GCUUUgC- -5'
15659 3' -48.5 NC_004065.1 + 89095 0.73 0.972985
Target:  5'- uUCUGCGGCGucAGGCGCGugcucaugcCCUGGAugGu -3'
miRNA:   3'- -AGAUGCCGUu-UUUGCGU---------GGGCUUugC- -5'
15659 3' -48.5 NC_004065.1 + 197851 0.72 0.978121
Target:  5'- --gGCGGCAGGAGUGCACCUu-GACGg -3'
miRNA:   3'- agaUGCCGUUUUUGCGUGGGcuUUGC- -5'
15659 3' -48.5 NC_004065.1 + 55533 0.72 0.981887
Target:  5'- gUCUGCGGCGAGGAacuugauguuaccgUGC-CCCGGgucGACGu -3'
miRNA:   3'- -AGAUGCCGUUUUU--------------GCGuGGGCU---UUGC- -5'
15659 3' -48.5 NC_004065.1 + 70829 0.72 0.982296
Target:  5'- --gGCGGCGAucgaagagaagaaAGACGCggACCCGGGAUGu -3'
miRNA:   3'- agaUGCCGUU-------------UUUGCG--UGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 75804 0.72 0.982498
Target:  5'- --aGCGGCGGcGAgGCACCUGgcACGa -3'
miRNA:   3'- agaUGCCGUUuUUgCGUGGGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 151085 0.72 0.982498
Target:  5'- cCUGCgcgGGCcuGGugGCGCCCGAGcucgGCGa -3'
miRNA:   3'- aGAUG---CCGuuUUugCGUGGGCUU----UGC- -5'
15659 3' -48.5 NC_004065.1 + 228996 0.74 0.9602
Target:  5'- --aACGGCGAGGGaGCGCgCGGAGCGa -3'
miRNA:   3'- agaUGCCGUUUUUgCGUGgGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 24735 0.74 0.952452
Target:  5'- --aGCGGCGAGucuGGCGCACUCGuugGGCGg -3'
miRNA:   3'- agaUGCCGUUU---UUGCGUGGGCu--UUGC- -5'
15659 3' -48.5 NC_004065.1 + 77988 0.75 0.943751
Target:  5'- --cGCGGCGAGc-CGC-CCCGGGACGg -3'
miRNA:   3'- agaUGCCGUUUuuGCGuGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 41472 0.77 0.870932
Target:  5'- aCUAUGGUAAGcAGCGUGCgCCGggGCGu -3'
miRNA:   3'- aGAUGCCGUUU-UUGCGUG-GGCuuUGC- -5'
15659 3' -48.5 NC_004065.1 + 19509 0.77 0.870932
Target:  5'- --gACGGCGGAAcCGCugCCGAAcgGCGa -3'
miRNA:   3'- agaUGCCGUUUUuGCGugGGCUU--UGC- -5'
15659 3' -48.5 NC_004065.1 + 170428 0.77 0.870932
Target:  5'- gCUGCGGCGGAucgacgaagGACGcCGCCgGAGGCGc -3'
miRNA:   3'- aGAUGCCGUUU---------UUGC-GUGGgCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 196384 0.77 0.878317
Target:  5'- --gACGGUcGAAGCGCGCCCcGAACGc -3'
miRNA:   3'- agaUGCCGuUUUUGCGUGGGcUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 75043 0.75 0.9234
Target:  5'- --aGCGGCuguaccucuuGAAGACGUGCUCGAGGCGg -3'
miRNA:   3'- agaUGCCG----------UUUUUGCGUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 97505 0.75 0.9234
Target:  5'- aUCUGCGGCGGAucaccccgacGAUGCGCgCGAacGACGc -3'
miRNA:   3'- -AGAUGCCGUUU----------UUGCGUGgGCU--UUGC- -5'
15659 3' -48.5 NC_004065.1 + 1932 0.75 0.927249
Target:  5'- gUCUGCGGCGucgucuccaccgcgGAGACuaCGCUCGAGACGg -3'
miRNA:   3'- -AGAUGCCGU--------------UUUUGc-GUGGGCUUUGC- -5'
15659 3' -48.5 NC_004065.1 + 108944 0.75 0.92886
Target:  5'- cCUGCGGCAGu-ACGCcgacgACCUGggGCa -3'
miRNA:   3'- aGAUGCCGUUuuUGCG-----UGGGCuuUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.