miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 3' -52.9 NC_004065.1 + 2090 1.11 0.008183
Target:  5'- uCCGGACACCAACACGAUCACCGUCACc -3'
miRNA:   3'- -GGCCUGUGGUUGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 211811 0.92 0.112052
Target:  5'- aCGGugACCAuCGCGAUCACCGUCGCc -3'
miRNA:   3'- gGCCugUGGUuGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 138391 0.87 0.221843
Target:  5'- gCCGGcCgcuguagccaugcucACCGACGCGAUCGCCGUCGCg -3'
miRNA:   3'- -GGCCuG---------------UGGUUGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 22485 0.83 0.371525
Target:  5'- uUGGGCGCCGGCACGAUgACgGUCAUc -3'
miRNA:   3'- gGCCUGUGGUUGUGCUAgUGgCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 72011 0.79 0.525917
Target:  5'- --cGACGCCAACACGGUCACCGaccgguagcgccgcgUCACc -3'
miRNA:   3'- ggcCUGUGGUUGUGCUAGUGGC---------------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 151416 0.79 0.530749
Target:  5'- gCCGGcGCGCCAGCucGCGGUCGCCGacgaucaUCGCg -3'
miRNA:   3'- -GGCC-UGUGGUUG--UGCUAGUGGC-------AGUG- -5'
15662 3' -52.9 NC_004065.1 + 126153 0.78 0.620785
Target:  5'- gCGaGAagucCGCCAugaucgcgugguGCGCGAUCGCCGUCACg -3'
miRNA:   3'- gGC-CU----GUGGU------------UGUGCUAGUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 135642 0.77 0.660869
Target:  5'- gUCGGGCgcgGCCGGCGCG-UCACCGUCc- -3'
miRNA:   3'- -GGCCUG---UGGUUGUGCuAGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 91452 0.76 0.690726
Target:  5'- cCUGGACGCCGAaGCGGcgccuggCAUCGUCACa -3'
miRNA:   3'- -GGCCUGUGGUUgUGCUa------GUGGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 44842 0.76 0.700595
Target:  5'- aCGGACAgCGACACGGgccggagCAgCGUCGCc -3'
miRNA:   3'- gGCCUGUgGUUGUGCUa------GUgGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 53941 0.76 0.700595
Target:  5'- gUCGGGCGgCGACACGAUCAUCGg--- -3'
miRNA:   3'- -GGCCUGUgGUUGUGCUAGUGGCagug -5'
15662 3' -52.9 NC_004065.1 + 224798 0.76 0.710409
Target:  5'- gCGGGCGgCAGCACGGUCacgaccGCCGUCu- -3'
miRNA:   3'- gGCCUGUgGUUGUGCUAG------UGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 124720 0.76 0.710409
Target:  5'- cCCGGcGCAgCGGCACGGcgCGCCGUCGg -3'
miRNA:   3'- -GGCC-UGUgGUUGUGCUa-GUGGCAGUg -5'
15662 3' -52.9 NC_004065.1 + 71761 0.75 0.729838
Target:  5'- gUCGGugACCGuguugGCGuCGAUCGCCGcCACu -3'
miRNA:   3'- -GGCCugUGGU-----UGU-GCUAGUGGCaGUG- -5'
15662 3' -52.9 NC_004065.1 + 61063 0.75 0.739435
Target:  5'- aCGGACACCGAgAggccguUGGUCACCauGUCGCa -3'
miRNA:   3'- gGCCUGUGGUUgU------GCUAGUGG--CAGUG- -5'
15662 3' -52.9 NC_004065.1 + 198043 0.75 0.75835
Target:  5'- gCUGGugACCAACGCGGaCACCGgCGa -3'
miRNA:   3'- -GGCCugUGGUUGUGCUaGUGGCaGUg -5'
15662 3' -52.9 NC_004065.1 + 79957 0.75 0.774094
Target:  5'- gUCGGGCAgggugaggacguacUCGACACGGUCGCCGacCGCg -3'
miRNA:   3'- -GGCCUGU--------------GGUUGUGCUAGUGGCa-GUG- -5'
15662 3' -52.9 NC_004065.1 + 126778 0.75 0.776837
Target:  5'- uUGGACACCAuCACcGUCGuCUGUCGCg -3'
miRNA:   3'- gGCCUGUGGUuGUGcUAGU-GGCAGUG- -5'
15662 3' -52.9 NC_004065.1 + 132297 0.75 0.776837
Target:  5'- gCCGGGCAUaAACAUGuUCGCCGUCu- -3'
miRNA:   3'- -GGCCUGUGgUUGUGCuAGUGGCAGug -5'
15662 3' -52.9 NC_004065.1 + 146833 0.74 0.785898
Target:  5'- gCCGGGCuCCGGCACGAgcggCACC-UUACc -3'
miRNA:   3'- -GGCCUGuGGUUGUGCUa---GUGGcAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.