miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15662 5' -58.7 NC_004065.1 + 213136 0.66 0.922687
Target:  5'- gCGUGGUCaCCGUagugGCGUUgGGGCUGg -3'
miRNA:   3'- gGCGCUAGcGGCGg---CGCAAgUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 130084 0.66 0.922687
Target:  5'- -aGCagcCGCCGCCGCGg-CGGuCCGg -3'
miRNA:   3'- ggCGcuaGCGGCGGCGCaaGUCuGGC- -5'
15662 5' -58.7 NC_004065.1 + 203796 0.66 0.922687
Target:  5'- aCCGCaaauacgCGCCGuuGUuUUgGGACCGg -3'
miRNA:   3'- -GGCGcua----GCGGCggCGcAAgUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 34693 0.66 0.922687
Target:  5'- aCGCGggCGCCGCCcaggaGCacgaAGACCu -3'
miRNA:   3'- gGCGCuaGCGGCGG-----CGcaagUCUGGc -5'
15662 5' -58.7 NC_004065.1 + 196810 0.66 0.922687
Target:  5'- aCGCGuUCGCgGCCGUGggCGccuacgcGCCGg -3'
miRNA:   3'- gGCGCuAGCGgCGGCGCaaGUc------UGGC- -5'
15662 5' -58.7 NC_004065.1 + 170287 0.66 0.922687
Target:  5'- aCGCGGucggcaccaUCGCCGCCGgGUcgguaaacaUCGGcagcaucgauGCCGc -3'
miRNA:   3'- gGCGCU---------AGCGGCGGCgCA---------AGUC----------UGGC- -5'
15662 5' -58.7 NC_004065.1 + 124320 0.66 0.922687
Target:  5'- gUCGUGGuUCGCCGUCGCcgcCAGucCCGg -3'
miRNA:   3'- -GGCGCU-AGCGGCGGCGcaaGUCu-GGC- -5'
15662 5' -58.7 NC_004065.1 + 145243 0.66 0.922687
Target:  5'- aCGCGAUccaccaucugaCGCCGCaGCuGUUCcuGGACCc -3'
miRNA:   3'- gGCGCUA-----------GCGGCGgCG-CAAG--UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 64649 0.66 0.922687
Target:  5'- aCCGCG--CGuCCGCCGUGcu--GGCCGa -3'
miRNA:   3'- -GGCGCuaGC-GGCGGCGCaaguCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 64849 0.66 0.922687
Target:  5'- -gGCGggCGUCGCCGCGUgguuaUCGuGGCa- -3'
miRNA:   3'- ggCGCuaGCGGCGGCGCA-----AGU-CUGgc -5'
15662 5' -58.7 NC_004065.1 + 43046 0.66 0.917955
Target:  5'- aCCGCGucggcuucucgaggCGUCGgCGCGa-CAGACCGc -3'
miRNA:   3'- -GGCGCua------------GCGGCgGCGCaaGUCUGGC- -5'
15662 5' -58.7 NC_004065.1 + 141552 0.66 0.917419
Target:  5'- aCGCGcucuUCGgCGUCGCGcgCaAGACCu -3'
miRNA:   3'- gGCGCu---AGCgGCGGCGCaaG-UCUGGc -5'
15662 5' -58.7 NC_004065.1 + 7182 0.66 0.917419
Target:  5'- aUCGCGAUCGUCauGCuCGUcugcuucucGUUCGGugCGu -3'
miRNA:   3'- -GGCGCUAGCGG--CG-GCG---------CAAGUCugGC- -5'
15662 5' -58.7 NC_004065.1 + 103553 0.66 0.917419
Target:  5'- aCCGCuGAgccUGCCGCCGCGgccucgaAGaACCu -3'
miRNA:   3'- -GGCG-CUa--GCGGCGGCGCaag----UC-UGGc -5'
15662 5' -58.7 NC_004065.1 + 63483 0.66 0.917419
Target:  5'- gCCGCcaggCGCCGUCGCGcagccaGGugCGg -3'
miRNA:   3'- -GGCGcua-GCGGCGGCGCaag---UCugGC- -5'
15662 5' -58.7 NC_004065.1 + 25104 0.66 0.917419
Target:  5'- gCCGCcGUCGCCGCCaacaUCGGgcGCCGc -3'
miRNA:   3'- -GGCGcUAGCGGCGGcgcaAGUC--UGGC- -5'
15662 5' -58.7 NC_004065.1 + 70540 0.66 0.917419
Target:  5'- gCUGCuGAagGCCGCCGCGgggUUgcGCCa -3'
miRNA:   3'- -GGCG-CUagCGGCGGCGCa--AGucUGGc -5'
15662 5' -58.7 NC_004065.1 + 148892 0.66 0.917419
Target:  5'- uUCGCcaucgaGUCGCUGCCGCuGUcCAGACa- -3'
miRNA:   3'- -GGCGc-----UAGCGGCGGCG-CAaGUCUGgc -5'
15662 5' -58.7 NC_004065.1 + 135308 0.66 0.917419
Target:  5'- uCCGCG---GCUGCCGCGUaCGccuGACCu -3'
miRNA:   3'- -GGCGCuagCGGCGGCGCAaGU---CUGGc -5'
15662 5' -58.7 NC_004065.1 + 99859 0.66 0.915797
Target:  5'- gCCcCGAUCGCCGCCGUgcgaggggggaaaGggaugaucacccUCAGGCCc -3'
miRNA:   3'- -GGcGCUAGCGGCGGCG-------------Ca-----------AGUCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.