miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 5' -53.5 NC_004065.1 + 6436 1.1 0.006328
Target:  5'- aCAACAUAGCACCGACAGCGAGCCAGAg -3'
miRNA:   3'- -GUUGUAUCGUGGCUGUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 103155 0.78 0.481349
Target:  5'- -cGCGUAGCACCGcCAGUGAGUUGGGg -3'
miRNA:   3'- guUGUAUCGUGGCuGUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 93610 0.78 0.519859
Target:  5'- gCGACGggcgGGUcugGCCGGCGGCGGGCCGGc -3'
miRNA:   3'- -GUUGUa---UCG---UGGCUGUCGCUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 130610 0.75 0.639794
Target:  5'- gCGGCGcGGCGCCGACAGCguccggugacaaaGAGCgAGAg -3'
miRNA:   3'- -GUUGUaUCGUGGCUGUCG-------------CUCGgUCU- -5'
15664 5' -53.5 NC_004065.1 + 18280 0.75 0.658166
Target:  5'- ---aGUAGCGCCGAUAGgacgaaagccgacaCGAGCCGGAc -3'
miRNA:   3'- guugUAUCGUGGCUGUC--------------GCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 164539 0.75 0.681536
Target:  5'- uCGACAUAGCucgcugugucgaGCCGGCGGCGGcGCCGa- -3'
miRNA:   3'- -GUUGUAUCG------------UGGCUGUCGCU-CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 142785 0.73 0.750884
Target:  5'- gGugGUGGCGCCGGgGGCG-GCCAu- -3'
miRNA:   3'- gUugUAUCGUGGCUgUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 164146 0.73 0.788422
Target:  5'- aAACGUu-CACCGACGGUGGGCUAGc -3'
miRNA:   3'- gUUGUAucGUGGCUGUCGCUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 95528 0.72 0.815136
Target:  5'- -cGCAU-GCGCCGAUAGCGA-UCAGAu -3'
miRNA:   3'- guUGUAuCGUGGCUGUCGCUcGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 54706 0.72 0.82372
Target:  5'- gCGGCAgaccGCGCgCGaACAGCGAGCgAGAg -3'
miRNA:   3'- -GUUGUau--CGUG-GC-UGUCGCUCGgUCU- -5'
15664 5' -53.5 NC_004065.1 + 128733 0.72 0.82372
Target:  5'- gCAGCAgcGGCGCUGGCAGUGguAGCCuGAu -3'
miRNA:   3'- -GUUGUa-UCGUGGCUGUCGC--UCGGuCU- -5'
15664 5' -53.5 NC_004065.1 + 107356 0.72 0.832131
Target:  5'- -cGCGUAGUcgGCCGACAGCGuGCguugCAGGa -3'
miRNA:   3'- guUGUAUCG--UGGCUGUCGCuCG----GUCU- -5'
15664 5' -53.5 NC_004065.1 + 16858 0.72 0.832131
Target:  5'- -cGCAc-GCACggCGAgGGCGAGCCAGAa -3'
miRNA:   3'- guUGUauCGUG--GCUgUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 31146 0.71 0.84036
Target:  5'- cCGACucgGGCAUCGACAccgccGCG-GCCGGAg -3'
miRNA:   3'- -GUUGua-UCGUGGCUGU-----CGCuCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 100970 0.71 0.848401
Target:  5'- cCGGCAcAGCGCCGucCGGUaGGCCAGGu -3'
miRNA:   3'- -GUUGUaUCGUGGCu-GUCGcUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 1446 0.71 0.848401
Target:  5'- -cGCGUAGCAguaguaccCCGGCAGCGGcGCCGa- -3'
miRNA:   3'- guUGUAUCGU--------GGCUGUCGCU-CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 43224 0.71 0.848401
Target:  5'- -uGCGUAGCACCG-CuGCGcuuuuAGCCGGGc -3'
miRNA:   3'- guUGUAUCGUGGCuGuCGC-----UCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 61711 0.71 0.856246
Target:  5'- gCGGCGUAGCGgCGGauGCGAGCCAu- -3'
miRNA:   3'- -GUUGUAUCGUgGCUguCGCUCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 198367 0.71 0.871324
Target:  5'- uGACGcGGCgcgucGCCGACAGCGuGCCGa- -3'
miRNA:   3'- gUUGUaUCG-----UGGCUGUCGCuCGGUcu -5'
15664 5' -53.5 NC_004065.1 + 73974 0.71 0.871324
Target:  5'- gCAGCAgUGGCGCCaGCAGCGGcGgCGGAg -3'
miRNA:   3'- -GUUGU-AUCGUGGcUGUCGCU-CgGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.