miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 7449 1.09 0.010539
Target:  5'- gCACCGAACGAGAAGCAGACGAGCAUGa -3'
miRNA:   3'- -GUGGCUUGCUCUUCGUCUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 88168 0.79 0.549569
Target:  5'- uCGCCGGACGAGcGGCGGACGGGa--- -3'
miRNA:   3'- -GUGGCUUGCUCuUCGUCUGCUCguac -5'
15666 3' -52 NC_004065.1 + 58468 0.78 0.63095
Target:  5'- aACCGAGCGAGAacuugaccgugGGCGGAUuAGCGUGc -3'
miRNA:   3'- gUGGCUUGCUCU-----------UCGUCUGcUCGUAC- -5'
15666 3' -52 NC_004065.1 + 149441 0.77 0.641204
Target:  5'- gGCCGAGCGAGcGGauCGGACGAGCGc- -3'
miRNA:   3'- gUGGCUUGCUCuUC--GUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 113903 0.77 0.661685
Target:  5'- aCGCCGGACGAGAgGGCGGAgauCGcGCGUGu -3'
miRNA:   3'- -GUGGCUUGCUCU-UCGUCU---GCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 116344 0.76 0.702288
Target:  5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3'
miRNA:   3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 175793 0.76 0.732148
Target:  5'- uCGCCGAAUGAGAccucGguGGCGAGgAUGa -3'
miRNA:   3'- -GUGGCUUGCUCUu---CguCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 94339 0.76 0.735096
Target:  5'- gCGCCGAgcgaaagGCGAGAGGCAGAgcaaaagcggagcguCGAGCGg- -3'
miRNA:   3'- -GUGGCU-------UGCUCUUCGUCU---------------GCUCGUac -5'
15666 3' -52 NC_004065.1 + 23567 0.75 0.780051
Target:  5'- gGgCGGGCGGGcAGGCAGGCGGGCugGUGa -3'
miRNA:   3'- gUgGCUUGCUC-UUCGUCUGCUCG--UAC- -5'
15666 3' -52 NC_004065.1 + 130909 0.75 0.780051
Target:  5'- uGCCG-ACGuuGGGCAuGACGGGCGUGg -3'
miRNA:   3'- gUGGCuUGCucUUCGU-CUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 186016 0.75 0.788354
Target:  5'- gAUCGAGCGAGcgagcgaacgaccGGGCGGGCGGGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-------------UUCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 121417 0.73 0.841293
Target:  5'- cCGCCGGACGGcGGcuucAGCGGAUGGGCGc- -3'
miRNA:   3'- -GUGGCUUGCU-CU----UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 226105 0.73 0.84934
Target:  5'- aGCCGAACGAuucgaAAGCAGGCGGgggucgccGCGUGg -3'
miRNA:   3'- gUGGCUUGCUc----UUCGUCUGCU--------CGUAC- -5'
15666 3' -52 NC_004065.1 + 146385 0.73 0.84934
Target:  5'- uGCgGAugGAGAAGguGAUGucGCGUGa -3'
miRNA:   3'- gUGgCUugCUCUUCguCUGCu-CGUAC- -5'
15666 3' -52 NC_004065.1 + 150743 0.73 0.84934
Target:  5'- gGCCGAGCGGGAgaaGGCGGuCGAuGCGg- -3'
miRNA:   3'- gUGGCUUGCUCU---UCGUCuGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 150325 0.73 0.864836
Target:  5'- aGCUGAugGAGAAGCgGGACcGGCAg- -3'
miRNA:   3'- gUGGCUugCUCUUCG-UCUGcUCGUac -5'
15666 3' -52 NC_004065.1 + 74041 0.73 0.864836
Target:  5'- uCGCCGGaguGCGAGAcgaGGCGGAgGAGCu-- -3'
miRNA:   3'- -GUGGCU---UGCUCU---UCGUCUgCUCGuac -5'
15666 3' -52 NC_004065.1 + 88718 0.72 0.879489
Target:  5'- uCGCgGcGCGAGcGGCGGAUGAGCAc- -3'
miRNA:   3'- -GUGgCuUGCUCuUCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 76998 0.72 0.886487
Target:  5'- uGCUGGAgGAGGAGgAGGCG-GCGUGc -3'
miRNA:   3'- gUGGCUUgCUCUUCgUCUGCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 122402 0.72 0.899801
Target:  5'- ---aGAGCGAGAuGCAGACGuugcGCAUGu -3'
miRNA:   3'- guggCUUGCUCUuCGUCUGCu---CGUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.