Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 7449 | 1.09 | 0.010539 |
Target: 5'- gCACCGAACGAGAAGCAGACGAGCAUGa -3' miRNA: 3'- -GUGGCUUGCUCUUCGUCUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 88168 | 0.79 | 0.549569 |
Target: 5'- uCGCCGGACGAGcGGCGGACGGGa--- -3' miRNA: 3'- -GUGGCUUGCUCuUCGUCUGCUCguac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 58468 | 0.78 | 0.63095 |
Target: 5'- aACCGAGCGAGAacuugaccgugGGCGGAUuAGCGUGc -3' miRNA: 3'- gUGGCUUGCUCU-----------UCGUCUGcUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 149441 | 0.77 | 0.641204 |
Target: 5'- gGCCGAGCGAGcGGauCGGACGAGCGc- -3' miRNA: 3'- gUGGCUUGCUCuUC--GUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 113903 | 0.77 | 0.661685 |
Target: 5'- aCGCCGGACGAGAgGGCGGAgauCGcGCGUGu -3' miRNA: 3'- -GUGGCUUGCUCU-UCGUCU---GCuCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 116344 | 0.76 | 0.702288 |
Target: 5'- uCGCCGGAUGAGcucGGCcGACGAGCAg- -3' miRNA: 3'- -GUGGCUUGCUCu--UCGuCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 175793 | 0.76 | 0.732148 |
Target: 5'- uCGCCGAAUGAGAccucGguGGCGAGgAUGa -3' miRNA: 3'- -GUGGCUUGCUCUu---CguCUGCUCgUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 94339 | 0.76 | 0.735096 |
Target: 5'- gCGCCGAgcgaaagGCGAGAGGCAGAgcaaaagcggagcguCGAGCGg- -3' miRNA: 3'- -GUGGCU-------UGCUCUUCGUCU---------------GCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 23567 | 0.75 | 0.780051 |
Target: 5'- gGgCGGGCGGGcAGGCAGGCGGGCugGUGa -3' miRNA: 3'- gUgGCUUGCUC-UUCGUCUGCUCG--UAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 130909 | 0.75 | 0.780051 |
Target: 5'- uGCCG-ACGuuGGGCAuGACGGGCGUGg -3' miRNA: 3'- gUGGCuUGCucUUCGU-CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 186016 | 0.75 | 0.788354 |
Target: 5'- gAUCGAGCGAGcgagcgaacgaccGGGCGGGCGGGCGa- -3' miRNA: 3'- gUGGCUUGCUC-------------UUCGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 121417 | 0.73 | 0.841293 |
Target: 5'- cCGCCGGACGGcGGcuucAGCGGAUGGGCGc- -3' miRNA: 3'- -GUGGCUUGCU-CU----UCGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 226105 | 0.73 | 0.84934 |
Target: 5'- aGCCGAACGAuucgaAAGCAGGCGGgggucgccGCGUGg -3' miRNA: 3'- gUGGCUUGCUc----UUCGUCUGCU--------CGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 146385 | 0.73 | 0.84934 |
Target: 5'- uGCgGAugGAGAAGguGAUGucGCGUGa -3' miRNA: 3'- gUGgCUugCUCUUCguCUGCu-CGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 150743 | 0.73 | 0.84934 |
Target: 5'- gGCCGAGCGGGAgaaGGCGGuCGAuGCGg- -3' miRNA: 3'- gUGGCUUGCUCU---UCGUCuGCU-CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 150325 | 0.73 | 0.864836 |
Target: 5'- aGCUGAugGAGAAGCgGGACcGGCAg- -3' miRNA: 3'- gUGGCUugCUCUUCG-UCUGcUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 74041 | 0.73 | 0.864836 |
Target: 5'- uCGCCGGaguGCGAGAcgaGGCGGAgGAGCu-- -3' miRNA: 3'- -GUGGCU---UGCUCU---UCGUCUgCUCGuac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 88718 | 0.72 | 0.879489 |
Target: 5'- uCGCgGcGCGAGcGGCGGAUGAGCAc- -3' miRNA: 3'- -GUGgCuUGCUCuUCGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 76998 | 0.72 | 0.886487 |
Target: 5'- uGCUGGAgGAGGAGgAGGCG-GCGUGc -3' miRNA: 3'- gUGGCUUgCUCUUCgUCUGCuCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 122402 | 0.72 | 0.899801 |
Target: 5'- ---aGAGCGAGAuGCAGACGuugcGCAUGu -3' miRNA: 3'- guggCUUGCUCUuCGUCUGCu---CGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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