miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 81203 0.7 0.95983
Target:  5'- gGCCGAGCGAG-GGCAuGuuGGGCAa- -3'
miRNA:   3'- gUGGCUUGCUCuUCGU-CugCUCGUac -5'
15666 3' -52 NC_004065.1 + 138432 0.72 0.906111
Target:  5'- cCGCCGugcguccuCGAGGggucggGGCGGGCGAGCAg- -3'
miRNA:   3'- -GUGGCuu------GCUCU------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 176583 0.71 0.928449
Target:  5'- aCGCUGGgauaGCGgaaguguggaauuAGAGGCAGACGAGgAUGa -3'
miRNA:   3'- -GUGGCU----UGC-------------UCUUCGUCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 41489 0.71 0.928974
Target:  5'- gCGCCGGggcgucgggACGGGGAGCGcGCGGGCGg- -3'
miRNA:   3'- -GUGGCU---------UGCUCUUCGUcUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 133947 0.71 0.928974
Target:  5'- uCACaCGGcCGAGAcccGCGGACGGGCAa- -3'
miRNA:   3'- -GUG-GCUuGCUCUu--CGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 128813 0.71 0.928974
Target:  5'- gACCG-ACGuGAAgGCGGACGAGCc-- -3'
miRNA:   3'- gUGGCuUGCuCUU-CGUCUGCUCGuac -5'
15666 3' -52 NC_004065.1 + 71962 0.7 0.938491
Target:  5'- cCGCCGGugGAGccGGGCAGcccggagGCGAcGCAUGc -3'
miRNA:   3'- -GUGGCUugCUC--UUCGUC-------UGCU-CGUAC- -5'
15666 3' -52 NC_004065.1 + 119990 0.7 0.956118
Target:  5'- gCGCCGAGCGGGuggaagaacacGGCGGGCGGuGCcgGc -3'
miRNA:   3'- -GUGGCUUGCUCu----------UCGUCUGCU-CGuaC- -5'
15666 3' -52 NC_004065.1 + 51061 0.7 0.95983
Target:  5'- aCugCGAAcccCGAGGAGUAGAuuCGAGgAUGa -3'
miRNA:   3'- -GugGCUU---GCUCUUCGUCU--GCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 85370 0.72 0.899801
Target:  5'- aACCGAACGAGAucAGUAGACacAGaCAUGc -3'
miRNA:   3'- gUGGCUUGCUCU--UCGUCUGc-UC-GUAC- -5'
15666 3' -52 NC_004065.1 + 122402 0.72 0.899801
Target:  5'- ---aGAGCGAGAuGCAGACGuugcGCAUGu -3'
miRNA:   3'- guggCUUGCUCUuCGUCUGCu---CGUAC- -5'
15666 3' -52 NC_004065.1 + 76998 0.72 0.886487
Target:  5'- uGCUGGAgGAGGAGgAGGCG-GCGUGc -3'
miRNA:   3'- gUGGCUUgCUCUUCgUCUGCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 58468 0.78 0.63095
Target:  5'- aACCGAGCGAGAacuugaccgugGGCGGAUuAGCGUGc -3'
miRNA:   3'- gUGGCUUGCUCU-----------UCGUCUGcUCGUAC- -5'
15666 3' -52 NC_004065.1 + 113903 0.77 0.661685
Target:  5'- aCGCCGGACGAGAgGGCGGAgauCGcGCGUGu -3'
miRNA:   3'- -GUGGCUUGCUCU-UCGUCU---GCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 175793 0.76 0.732148
Target:  5'- uCGCCGAAUGAGAccucGguGGCGAGgAUGa -3'
miRNA:   3'- -GUGGCUUGCUCUu---CguCUGCUCgUAC- -5'
15666 3' -52 NC_004065.1 + 23567 0.75 0.780051
Target:  5'- gGgCGGGCGGGcAGGCAGGCGGGCugGUGa -3'
miRNA:   3'- gUgGCUUGCUC-UUCGUCUGCUCG--UAC- -5'
15666 3' -52 NC_004065.1 + 121417 0.73 0.841293
Target:  5'- cCGCCGGACGGcGGcuucAGCGGAUGGGCGc- -3'
miRNA:   3'- -GUGGCUUGCU-CU----UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 226105 0.73 0.84934
Target:  5'- aGCCGAACGAuucgaAAGCAGGCGGgggucgccGCGUGg -3'
miRNA:   3'- gUGGCUUGCUc----UUCGUCUGCU--------CGUAC- -5'
15666 3' -52 NC_004065.1 + 74041 0.73 0.864836
Target:  5'- uCGCCGGaguGCGAGAcgaGGCGGAgGAGCu-- -3'
miRNA:   3'- -GUGGCU---UGCUCU---UCGUCUgCUCGuac -5'
15666 3' -52 NC_004065.1 + 88718 0.72 0.879489
Target:  5'- uCGCgGcGCGAGcGGCGGAUGAGCAc- -3'
miRNA:   3'- -GUGgCuUGCUCuUCGUCUGCUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.