Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15666 | 3' | -52 | NC_004065.1 | + | 121012 | 0.67 | 0.992431 |
Target: 5'- gUACCgugGAAgGAGcGGCAGGugcUGAGCAUGa -3' miRNA: 3'- -GUGG---CUUgCUCuUCGUCU---GCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 139332 | 0.67 | 0.992431 |
Target: 5'- --gCGAgACGAGAcgGGcCAGACGGGCAc- -3' miRNA: 3'- gugGCU-UGCUCU--UC-GUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 135128 | 0.67 | 0.992431 |
Target: 5'- uCACCGGGCGGGc-GCGG-CGGGUgAUGa -3' miRNA: 3'- -GUGGCUUGCUCuuCGUCuGCUCG-UAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 6524 | 0.67 | 0.992431 |
Target: 5'- uUACCGuccGCGGGGAuGCGGACGGccGCGa- -3' miRNA: 3'- -GUGGCu--UGCUCUU-CGUCUGCU--CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 81863 | 0.67 | 0.992116 |
Target: 5'- -cCCGAugGuGAagagaugguucucgGGCAcGGCGGGCGUGc -3' miRNA: 3'- guGGCUugCuCU--------------UCGU-CUGCUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 39077 | 0.67 | 0.991792 |
Target: 5'- gGCUGGgggucggggagaucaGCGAGAGGCGGAUGGGg--- -3' miRNA: 3'- gUGGCU---------------UGCUCUUCGUCUGCUCguac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 93778 | 0.67 | 0.991343 |
Target: 5'- aGCCGGGgagcuggucCGGGAAGcCAGGCGGGUccGg -3' miRNA: 3'- gUGGCUU---------GCUCUUC-GUCUGCUCGuaC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 74843 | 0.67 | 0.991228 |
Target: 5'- gACCGAgggGCGcAGGuugaggcggcgguGGUAGACGGGCAg- -3' miRNA: 3'- gUGGCU---UGC-UCU-------------UCGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 111398 | 0.67 | 0.990135 |
Target: 5'- gACCuua-GAGggGCAGACGAcGCGc- -3' miRNA: 3'- gUGGcuugCUCuuCGUCUGCU-CGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 100287 | 0.67 | 0.990135 |
Target: 5'- aCGCCGcGgGGGcGGCGGACGAGgCGa- -3' miRNA: 3'- -GUGGCuUgCUCuUCGUCUGCUC-GUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 96546 | 0.67 | 0.98935 |
Target: 5'- aGCUGGACGAGGAGuCGcuggacucguccgccGACGAGCc-- -3' miRNA: 3'- gUGGCUUGCUCUUC-GU---------------CUGCUCGuac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 224528 | 0.67 | 0.9888 |
Target: 5'- gCGCUGGAuCGuGcuGCGGGCGAGaCGUGg -3' miRNA: 3'- -GUGGCUU-GCuCuuCGUCUGCUC-GUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 20849 | 0.67 | 0.9888 |
Target: 5'- gCGCCGGuccGCGAGcGGUagguagagAGGCGAGCGa- -3' miRNA: 3'- -GUGGCU---UGCUCuUCG--------UCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 125286 | 0.67 | 0.987327 |
Target: 5'- gGCCuGAACGGGcGGCuguguGACGAGCc-- -3' miRNA: 3'- gUGG-CUUGCUCuUCGu----CUGCUCGuac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 3803 | 0.67 | 0.987327 |
Target: 5'- -uCCGGAUGAGGAGaugcugcggaAGAUGAGCGa- -3' miRNA: 3'- guGGCUUGCUCUUCg---------UCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 69229 | 0.67 | 0.987327 |
Target: 5'- uCGCUGAACGAGAucaagGGCGuGAagaugcugaaGAGCGUGc -3' miRNA: 3'- -GUGGCUUGCUCU-----UCGU-CUg---------CUCGUAC- -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 227873 | 0.67 | 0.987327 |
Target: 5'- --aCGGACGGGGggagacGGCGGACGAGgAUc -3' miRNA: 3'- gugGCUUGCUCU------UCGUCUGCUCgUAc -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 126307 | 0.67 | 0.987172 |
Target: 5'- uCACCGAGaCGcAGAuggacgugcugaaGGUGGGCGAGCGg- -3' miRNA: 3'- -GUGGCUU-GC-UCU-------------UCGUCUGCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 42981 | 0.68 | 0.98571 |
Target: 5'- cCGCCGcgcuGCGAucacuGggGCGGAgGAGCGc- -3' miRNA: 3'- -GUGGCu---UGCU-----CuuCGUCUgCUCGUac -5' |
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15666 | 3' | -52 | NC_004065.1 | + | 54507 | 0.68 | 0.98571 |
Target: 5'- uCGCCGGACGGGAGau-GACGAuGUGUGc -3' miRNA: 3'- -GUGGCUUGCUCUUcguCUGCU-CGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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