miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15666 3' -52 NC_004065.1 + 56599 0.66 0.995745
Target:  5'- uGCCGucguCGAGcGAGCAGGCGGccGCGg- -3'
miRNA:   3'- gUGGCuu--GCUC-UUCGUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 58468 0.78 0.63095
Target:  5'- aACCGAGCGAGAacuugaccgugGGCGGAUuAGCGUGc -3'
miRNA:   3'- gUGGCUUGCUCU-----------UCGUCUGcUCGUAC- -5'
15666 3' -52 NC_004065.1 + 59130 0.68 0.98394
Target:  5'- gACCGAGCGAGcGAGCgcgAGGCGAcgacgGCGa- -3'
miRNA:   3'- gUGGCUUGCUC-UUCG---UCUGCU-----CGUac -5'
15666 3' -52 NC_004065.1 + 59566 0.68 0.98571
Target:  5'- aGCCGAugGCGAcGGGCAG-CGAcugcGCAUGg -3'
miRNA:   3'- gUGGCU--UGCUcUUCGUCuGCU----CGUAC- -5'
15666 3' -52 NC_004065.1 + 63585 0.69 0.96332
Target:  5'- cCAUCGAGaggaaGaAGAGGCuGACGAGCAc- -3'
miRNA:   3'- -GUGGCUUg----C-UCUUCGuCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 64914 0.66 0.995745
Target:  5'- uCGCCGGGCGGGAcGCcgccucagAGACGAcgGCGc- -3'
miRNA:   3'- -GUGGCUUGCUCUuCG--------UCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 67142 0.66 0.996354
Target:  5'- gCGCCuGGACGcGAucGCGGACGAGaagGUGa -3'
miRNA:   3'- -GUGG-CUUGCuCUu-CGUCUGCUCg--UAC- -5'
15666 3' -52 NC_004065.1 + 69082 0.69 0.975164
Target:  5'- aCGCaGAuCGAGGAGguGGaGAGCAUGa -3'
miRNA:   3'- -GUGgCUuGCUCUUCguCUgCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 69163 0.69 0.96332
Target:  5'- aCGCUGGACGAGgcGgAGGCGAagGCGa- -3'
miRNA:   3'- -GUGGCUUGCUCuuCgUCUGCU--CGUac -5'
15666 3' -52 NC_004065.1 + 69229 0.67 0.987327
Target:  5'- uCGCUGAACGAGAucaagGGCGuGAagaugcugaaGAGCGUGc -3'
miRNA:   3'- -GUGGCUUGCUCU-----UCGU-CUg---------CUCGUAC- -5'
15666 3' -52 NC_004065.1 + 71962 0.7 0.938491
Target:  5'- cCGCCGGugGAGccGGGCAGcccggagGCGAcGCAUGc -3'
miRNA:   3'- -GUGGCUugCUC--UUCGUC-------UGCU-CGUAC- -5'
15666 3' -52 NC_004065.1 + 74041 0.73 0.864836
Target:  5'- uCGCCGGaguGCGAGAcgaGGCGGAgGAGCu-- -3'
miRNA:   3'- -GUGGCU---UGCUCU---UCGUCUgCUCGuac -5'
15666 3' -52 NC_004065.1 + 74799 0.66 0.995056
Target:  5'- gCGCuCGcGCaAGAuGCuGACGAGCGUGg -3'
miRNA:   3'- -GUG-GCuUGcUCUuCGuCUGCUCGUAC- -5'
15666 3' -52 NC_004065.1 + 74843 0.67 0.991228
Target:  5'- gACCGAgggGCGcAGGuugaggcggcgguGGUAGACGGGCAg- -3'
miRNA:   3'- gUGGCU---UGC-UCU-------------UCGUCUGCUCGUac -5'
15666 3' -52 NC_004065.1 + 74959 0.68 0.98571
Target:  5'- uGCCGAAgGGGAAGUggaAGACGAacugguGCAg- -3'
miRNA:   3'- gUGGCUUgCUCUUCG---UCUGCU------CGUac -5'
15666 3' -52 NC_004065.1 + 75437 0.68 0.982008
Target:  5'- cCGCCGAACGGGccgcaugccAGUAGAgGAGCc-- -3'
miRNA:   3'- -GUGGCUUGCUCu--------UCGUCUgCUCGuac -5'
15666 3' -52 NC_004065.1 + 76998 0.72 0.886487
Target:  5'- uGCUGGAgGAGGAGgAGGCG-GCGUGc -3'
miRNA:   3'- gUGGCUUgCUCUUCgUCUGCuCGUAC- -5'
15666 3' -52 NC_004065.1 + 79139 0.68 0.982008
Target:  5'- aACUGAuuuuCGAGAAGgAGACGGuGCAc- -3'
miRNA:   3'- gUGGCUu---GCUCUUCgUCUGCU-CGUac -5'
15666 3' -52 NC_004065.1 + 81203 0.7 0.95983
Target:  5'- gGCCGAGCGAG-GGCAuGuuGGGCAa- -3'
miRNA:   3'- gUGGCUUGCUCuUCGU-CugCUCGUac -5'
15666 3' -52 NC_004065.1 + 81863 0.67 0.992116
Target:  5'- -cCCGAugGuGAagagaugguucucgGGCAcGGCGGGCGUGc -3'
miRNA:   3'- guGGCUugCuCU--------------UCGU-CUGCUCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.