miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 12667 1.11 0.016184
Target:  5'- cCUACGACGAUAGCAGAUACGAGCACGa -3'
miRNA:   3'- -GAUGCUGCUAUCGUCUAUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 24843 0.82 0.60095
Target:  5'- -gGCGGCGGUGGCGGcgACGAcacGCGCGg -3'
miRNA:   3'- gaUGCUGCUAUCGUCuaUGCU---CGUGC- -5'
15667 3' -49.4 NC_004065.1 + 48563 0.8 0.663093
Target:  5'- -cGCGACGAUGG-AGAUgaaaGCGGGCACGg -3'
miRNA:   3'- gaUGCUGCUAUCgUCUA----UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 35522 0.79 0.734264
Target:  5'- -gGCGACGGaGGUGGggACGGGCACGg -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 91411 0.78 0.763591
Target:  5'- cCUGCGACGAUccGUGGGUccuCGAGCACGg -3'
miRNA:   3'- -GAUGCUGCUAu-CGUCUAu--GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 127241 0.78 0.800974
Target:  5'- -gGCG-CGGUGGCGGGgaugAUGAGCGCGa -3'
miRNA:   3'- gaUGCuGCUAUCGUCUa---UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 166808 0.77 0.818761
Target:  5'- cCUGCGugGAgAGCGuGugcUACGAGCACGa -3'
miRNA:   3'- -GAUGCugCUaUCGU-Cu--AUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 88719 0.77 0.844116
Target:  5'- -cGCGGCGcgAGCGGcggAUGAGCACGu -3'
miRNA:   3'- gaUGCUGCuaUCGUCua-UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 61710 0.77 0.844116
Target:  5'- -cGCGGCGuagcGGCGGAUGCGAGCcauGCGc -3'
miRNA:   3'- gaUGCUGCua--UCGUCUAUGCUCG---UGC- -5'
15667 3' -49.4 NC_004065.1 + 226719 0.76 0.860045
Target:  5'- -aGCGGCGcUGGCAGAagGCGAGCcCGg -3'
miRNA:   3'- gaUGCUGCuAUCGUCUa-UGCUCGuGC- -5'
15667 3' -49.4 NC_004065.1 + 48108 0.76 0.860045
Target:  5'- -gGCGGCGGUGGCGGcgGCGGugggaccucgcGCACGu -3'
miRNA:   3'- gaUGCUGCUAUCGUCuaUGCU-----------CGUGC- -5'
15667 3' -49.4 NC_004065.1 + 200787 0.76 0.874396
Target:  5'- -cGCGGCGGUGGCGGGcgACGgcgucucGGCGCGg -3'
miRNA:   3'- gaUGCUGCUAUCGUCUa-UGC-------UCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 61664 0.75 0.90886
Target:  5'- ---aGACGAUGGCGGuguaGAGCGCGa -3'
miRNA:   3'- gaugCUGCUAUCGUCuaugCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 74863 0.74 0.936575
Target:  5'- -gGCGGCGGUGGUAGA--CGGGCAgGu -3'
miRNA:   3'- gaUGCUGCUAUCGUCUauGCUCGUgC- -5'
15667 3' -49.4 NC_004065.1 + 152302 0.74 0.936575
Target:  5'- cCUGCGGCGGcGGCGGugccgGCGGGgACGa -3'
miRNA:   3'- -GAUGCUGCUaUCGUCua---UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 159942 0.73 0.945949
Target:  5'- -gGCGGCGAcGGCGGcgAgGAGCGCc -3'
miRNA:   3'- gaUGCUGCUaUCGUCuaUgCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 53757 0.73 0.945949
Target:  5'- -gAUGACGAU-GCAGAUcacuGCGAGgACGg -3'
miRNA:   3'- gaUGCUGCUAuCGUCUA----UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 27480 0.73 0.958219
Target:  5'- -cAUGGCGGUGGCGGAUAuCGGGguCu -3'
miRNA:   3'- gaUGCUGCUAUCGUCUAU-GCUCguGc -5'
15667 3' -49.4 NC_004065.1 + 167933 0.72 0.964583
Target:  5'- -gGCGACGAUcacugacgcgucGCGGGUucCGAGCACGg -3'
miRNA:   3'- gaUGCUGCUAu-----------CGUCUAu-GCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 175455 0.72 0.965246
Target:  5'- -cACGGCGA-AGCacaGGAggcUGCGAGCACGc -3'
miRNA:   3'- gaUGCUGCUaUCG---UCU---AUGCUCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.