Results 1 - 20 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 117 | 0.66 | 0.999746 |
Target: 5'- gUGCGAUGA-GGUGGcUGCGcGCACGu -3' miRNA: 3'- gAUGCUGCUaUCGUCuAUGCuCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 9497 | 0.7 | 0.992142 |
Target: 5'- -gACGAUGAUAGCGuuaucGAUuuCGAGUugGg -3' miRNA: 3'- gaUGCUGCUAUCGU-----CUAu-GCUCGugC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 9545 | 0.69 | 0.996783 |
Target: 5'- -cACGGCGAUcGCGGucgGCGuGUGCGa -3' miRNA: 3'- gaUGCUGCUAuCGUCua-UGCuCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 12667 | 1.11 | 0.016184 |
Target: 5'- cCUACGACGAUAGCAGAUACGAGCACGa -3' miRNA: 3'- -GAUGCUGCUAUCGUCUAUGCUCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 12701 | 0.68 | 0.998378 |
Target: 5'- uCUGCGGCGAUAcaacGC---UGCGAGUAUGa -3' miRNA: 3'- -GAUGCUGCUAU----CGucuAUGCUCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 12718 | 0.67 | 0.998883 |
Target: 5'- aUGCGGCGAUaaacGGCcacGUAaGAGCACGg -3' miRNA: 3'- gAUGCUGCUA----UCGuc-UAUgCUCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 12858 | 0.69 | 0.996783 |
Target: 5'- cCU-CGACGAgAGCAcacacGAgaACGAGCGCGg -3' miRNA: 3'- -GAuGCUGCUaUCGU-----CUa-UGCUCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 18067 | 0.66 | 0.999681 |
Target: 5'- uCU-CGACGAUGGCGGcaGCGAcCGCc -3' miRNA: 3'- -GAuGCUGCUAUCGUCuaUGCUcGUGc -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 20858 | 0.68 | 0.99865 |
Target: 5'- -cGCGAgCGGUAgGUAGAgagGCGAGCgacACGg -3' miRNA: 3'- gaUGCU-GCUAU-CGUCUa--UGCUCG---UGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 20891 | 0.69 | 0.996226 |
Target: 5'- cCUGCGACGGagacGGC-GAUACGGuCGCGg -3' miRNA: 3'- -GAUGCUGCUa---UCGuCUAUGCUcGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 23046 | 0.67 | 0.999387 |
Target: 5'- -aGCGACGGUGGCcGGUcGUGAGgACGa -3' miRNA: 3'- gaUGCUGCUAUCGuCUA-UGCUCgUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 23563 | 0.71 | 0.986826 |
Target: 5'- aUGCgGGCGGgcgGGCAGGcagGCGGGCugGu -3' miRNA: 3'- gAUG-CUGCUa--UCGUCUa--UGCUCGugC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 24543 | 0.72 | 0.974161 |
Target: 5'- -gACGACGGcAGCGGAgACGAGCcccuCGu -3' miRNA: 3'- gaUGCUGCUaUCGUCUaUGCUCGu---GC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 24843 | 0.82 | 0.60095 |
Target: 5'- -gGCGGCGGUGGCGGcgACGAcacGCGCGg -3' miRNA: 3'- gaUGCUGCUAUCGUCuaUGCU---CGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 26366 | 0.68 | 0.998061 |
Target: 5'- -gGCGACGGcGGCggGGAUACGGG-GCGu -3' miRNA: 3'- gaUGCUGCUaUCG--UCUAUGCUCgUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 27480 | 0.73 | 0.958219 |
Target: 5'- -cAUGGCGGUGGCGGAUAuCGGGguCu -3' miRNA: 3'- gaUGCUGCUAUCGUCUAU-GCUCguGc -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 27994 | 0.69 | 0.996167 |
Target: 5'- -cGCGGCGGggucauCAGAUcuuuggacagcgcGCGAGCACGg -3' miRNA: 3'- gaUGCUGCUauc---GUCUA-------------UGCUCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 28794 | 0.68 | 0.998378 |
Target: 5'- gUGCGGCGc-AGCAuGcgGCGGGCGCu -3' miRNA: 3'- gAUGCUGCuaUCGU-CuaUGCUCGUGc -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 30028 | 0.66 | 0.999681 |
Target: 5'- -gGCG-CGGUGGUg---ACGGGCACGa -3' miRNA: 3'- gaUGCuGCUAUCGucuaUGCUCGUGC- -5' |
|||||||
15667 | 3' | -49.4 | NC_004065.1 | + | 30498 | 0.67 | 0.99908 |
Target: 5'- -cGCGugGuaccgAGCAGAUGUGGGgACGa -3' miRNA: 3'- gaUGCugCua---UCGUCUAUGCUCgUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home