miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15667 3' -49.4 NC_004065.1 + 117 0.66 0.999746
Target:  5'- gUGCGAUGA-GGUGGcUGCGcGCACGu -3'
miRNA:   3'- gAUGCUGCUaUCGUCuAUGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 9497 0.7 0.992142
Target:  5'- -gACGAUGAUAGCGuuaucGAUuuCGAGUugGg -3'
miRNA:   3'- gaUGCUGCUAUCGU-----CUAu-GCUCGugC- -5'
15667 3' -49.4 NC_004065.1 + 9545 0.69 0.996783
Target:  5'- -cACGGCGAUcGCGGucgGCGuGUGCGa -3'
miRNA:   3'- gaUGCUGCUAuCGUCua-UGCuCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 12667 1.11 0.016184
Target:  5'- cCUACGACGAUAGCAGAUACGAGCACGa -3'
miRNA:   3'- -GAUGCUGCUAUCGUCUAUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 12701 0.68 0.998378
Target:  5'- uCUGCGGCGAUAcaacGC---UGCGAGUAUGa -3'
miRNA:   3'- -GAUGCUGCUAU----CGucuAUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 12718 0.67 0.998883
Target:  5'- aUGCGGCGAUaaacGGCcacGUAaGAGCACGg -3'
miRNA:   3'- gAUGCUGCUA----UCGuc-UAUgCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 12858 0.69 0.996783
Target:  5'- cCU-CGACGAgAGCAcacacGAgaACGAGCGCGg -3'
miRNA:   3'- -GAuGCUGCUaUCGU-----CUa-UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 18067 0.66 0.999681
Target:  5'- uCU-CGACGAUGGCGGcaGCGAcCGCc -3'
miRNA:   3'- -GAuGCUGCUAUCGUCuaUGCUcGUGc -5'
15667 3' -49.4 NC_004065.1 + 20858 0.68 0.99865
Target:  5'- -cGCGAgCGGUAgGUAGAgagGCGAGCgacACGg -3'
miRNA:   3'- gaUGCU-GCUAU-CGUCUa--UGCUCG---UGC- -5'
15667 3' -49.4 NC_004065.1 + 20891 0.69 0.996226
Target:  5'- cCUGCGACGGagacGGC-GAUACGGuCGCGg -3'
miRNA:   3'- -GAUGCUGCUa---UCGuCUAUGCUcGUGC- -5'
15667 3' -49.4 NC_004065.1 + 23046 0.67 0.999387
Target:  5'- -aGCGACGGUGGCcGGUcGUGAGgACGa -3'
miRNA:   3'- gaUGCUGCUAUCGuCUA-UGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 23563 0.71 0.986826
Target:  5'- aUGCgGGCGGgcgGGCAGGcagGCGGGCugGu -3'
miRNA:   3'- gAUG-CUGCUa--UCGUCUa--UGCUCGugC- -5'
15667 3' -49.4 NC_004065.1 + 24543 0.72 0.974161
Target:  5'- -gACGACGGcAGCGGAgACGAGCcccuCGu -3'
miRNA:   3'- gaUGCUGCUaUCGUCUaUGCUCGu---GC- -5'
15667 3' -49.4 NC_004065.1 + 24843 0.82 0.60095
Target:  5'- -gGCGGCGGUGGCGGcgACGAcacGCGCGg -3'
miRNA:   3'- gaUGCUGCUAUCGUCuaUGCU---CGUGC- -5'
15667 3' -49.4 NC_004065.1 + 26366 0.68 0.998061
Target:  5'- -gGCGACGGcGGCggGGAUACGGG-GCGu -3'
miRNA:   3'- gaUGCUGCUaUCG--UCUAUGCUCgUGC- -5'
15667 3' -49.4 NC_004065.1 + 27480 0.73 0.958219
Target:  5'- -cAUGGCGGUGGCGGAUAuCGGGguCu -3'
miRNA:   3'- gaUGCUGCUAUCGUCUAU-GCUCguGc -5'
15667 3' -49.4 NC_004065.1 + 27994 0.69 0.996167
Target:  5'- -cGCGGCGGggucauCAGAUcuuuggacagcgcGCGAGCACGg -3'
miRNA:   3'- gaUGCUGCUauc---GUCUA-------------UGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 28794 0.68 0.998378
Target:  5'- gUGCGGCGc-AGCAuGcgGCGGGCGCu -3'
miRNA:   3'- gAUGCUGCuaUCGU-CuaUGCUCGUGc -5'
15667 3' -49.4 NC_004065.1 + 30028 0.66 0.999681
Target:  5'- -gGCG-CGGUGGUg---ACGGGCACGa -3'
miRNA:   3'- gaUGCuGCUAUCGucuaUGCUCGUGC- -5'
15667 3' -49.4 NC_004065.1 + 30498 0.67 0.99908
Target:  5'- -cGCGugGuaccgAGCAGAUGUGGGgACGa -3'
miRNA:   3'- gaUGCugCua---UCGUCUAUGCUCgUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.