Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15669 | 5' | -54.5 | NC_004065.1 | + | 63318 | 0.67 | 0.970022 |
Target: 5'- cUGcUCGCGCgacagcagguccGGGAUCGuCGCCucGCGc -3' miRNA: 3'- cACuAGUGCG------------CCCUAGC-GCGGuuUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 81182 | 0.67 | 0.970022 |
Target: 5'- -cGAUCGCgGCGGccgccUCGUGgCCGAGCGa -3' miRNA: 3'- caCUAGUG-CGCCcu---AGCGC-GGUUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 53844 | 0.67 | 0.970022 |
Target: 5'- cGUGccaacUCuuCGCGGcGGUCGCGCCGgGAUGg -3' miRNA: 3'- -CACu----AGu-GCGCC-CUAGCGCGGU-UUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 43355 | 0.67 | 0.969154 |
Target: 5'- -gGAUCgGCGCcGGGUCGCGgaugcccggaccguCCGAACGu -3' miRNA: 3'- caCUAG-UGCGcCCUAGCGC--------------GGUUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 145172 | 0.67 | 0.967059 |
Target: 5'- -cGGUcCACGUGGGAgaGCGUCAuGACGc -3' miRNA: 3'- caCUA-GUGCGCCCUagCGCGGU-UUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 135620 | 0.67 | 0.967059 |
Target: 5'- --cGUCACGCGGGucuacgGCGCCAccAGCc -3' miRNA: 3'- cacUAGUGCGCCCuag---CGCGGU--UUGc -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 176762 | 0.67 | 0.967059 |
Target: 5'- --aGUgACGCGGGAgacuccUCGCGCCccaagguuugAGGCGa -3' miRNA: 3'- cacUAgUGCGCCCU------AGCGCGG----------UUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 41509 | 0.67 | 0.967059 |
Target: 5'- -gGAgCGCGCGGGcgGUCcCGCCAGagucGCGg -3' miRNA: 3'- caCUaGUGCGCCC--UAGcGCGGUU----UGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 114820 | 0.67 | 0.967059 |
Target: 5'- ----cCGCGCGGG-UCGCGauCCGGAUGa -3' miRNA: 3'- cacuaGUGCGCCCuAGCGC--GGUUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 144457 | 0.67 | 0.967059 |
Target: 5'- -cGAUCGCGaaGGcgaccAUgGCGCCGAACa -3' miRNA: 3'- caCUAGUGCgcCC-----UAgCGCGGUUUGc -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 145926 | 0.67 | 0.963894 |
Target: 5'- -cGGUCGuCGaaucCGGGAUCGUGUCGAGgGa -3' miRNA: 3'- caCUAGU-GC----GCCCUAGCGCGGUUUgC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 106425 | 0.67 | 0.963894 |
Target: 5'- uUGcUCACG-GGGAUCGCcagGCCcuuGACGa -3' miRNA: 3'- cACuAGUGCgCCCUAGCG---CGGu--UUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 127725 | 0.67 | 0.956941 |
Target: 5'- -cGGUgGCGcCGGGGUCGgGUCccGCGg -3' miRNA: 3'- caCUAgUGC-GCCCUAGCgCGGuuUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 24778 | 0.68 | 0.949126 |
Target: 5'- -----gGCGCGGGuaucUCGCGCC-AGCGc -3' miRNA: 3'- cacuagUGCGCCCu---AGCGCGGuUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 130421 | 0.68 | 0.940422 |
Target: 5'- -aGAUgGCGcCGGGGUCGCGgauAGCGa -3' miRNA: 3'- caCUAgUGC-GCCCUAGCGCgguUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 126167 | 0.68 | 0.935731 |
Target: 5'- aUGAUCGCGUGGugcgcGAUCGcCGUCAcGGCGu -3' miRNA: 3'- cACUAGUGCGCC-----CUAGC-GCGGU-UUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 68161 | 0.68 | 0.930811 |
Target: 5'- gGUGAUCGCgGCGGcGcgCGCGaCgGAGCu -3' miRNA: 3'- -CACUAGUG-CGCC-CuaGCGC-GgUUUGc -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 150619 | 0.68 | 0.930811 |
Target: 5'- cUGAUgACcCGGGAg-GUGCCGAACGu -3' miRNA: 3'- cACUAgUGcGCCCUagCGCGGUUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 196482 | 0.69 | 0.925662 |
Target: 5'- aUGuccaGCGUGuaGAUCGCGCCGAACGu -3' miRNA: 3'- cACuag-UGCGCc-CUAGCGCGGUUUGC- -5' |
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15669 | 5' | -54.5 | NC_004065.1 | + | 126759 | 0.69 | 0.916947 |
Target: 5'- -cGAUCgcgcggcgcauggcgACGCGGGugcagCGCGCCAAcaucGCGc -3' miRNA: 3'- caCUAG---------------UGCGCCCua---GCGCGGUU----UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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