miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15669 5' -54.5 NC_004065.1 + 63318 0.67 0.970022
Target:  5'- cUGcUCGCGCgacagcagguccGGGAUCGuCGCCucGCGc -3'
miRNA:   3'- cACuAGUGCG------------CCCUAGC-GCGGuuUGC- -5'
15669 5' -54.5 NC_004065.1 + 81182 0.67 0.970022
Target:  5'- -cGAUCGCgGCGGccgccUCGUGgCCGAGCGa -3'
miRNA:   3'- caCUAGUG-CGCCcu---AGCGC-GGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 53844 0.67 0.970022
Target:  5'- cGUGccaacUCuuCGCGGcGGUCGCGCCGgGAUGg -3'
miRNA:   3'- -CACu----AGu-GCGCC-CUAGCGCGGU-UUGC- -5'
15669 5' -54.5 NC_004065.1 + 43355 0.67 0.969154
Target:  5'- -gGAUCgGCGCcGGGUCGCGgaugcccggaccguCCGAACGu -3'
miRNA:   3'- caCUAG-UGCGcCCUAGCGC--------------GGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 145172 0.67 0.967059
Target:  5'- -cGGUcCACGUGGGAgaGCGUCAuGACGc -3'
miRNA:   3'- caCUA-GUGCGCCCUagCGCGGU-UUGC- -5'
15669 5' -54.5 NC_004065.1 + 135620 0.67 0.967059
Target:  5'- --cGUCACGCGGGucuacgGCGCCAccAGCc -3'
miRNA:   3'- cacUAGUGCGCCCuag---CGCGGU--UUGc -5'
15669 5' -54.5 NC_004065.1 + 176762 0.67 0.967059
Target:  5'- --aGUgACGCGGGAgacuccUCGCGCCccaagguuugAGGCGa -3'
miRNA:   3'- cacUAgUGCGCCCU------AGCGCGG----------UUUGC- -5'
15669 5' -54.5 NC_004065.1 + 41509 0.67 0.967059
Target:  5'- -gGAgCGCGCGGGcgGUCcCGCCAGagucGCGg -3'
miRNA:   3'- caCUaGUGCGCCC--UAGcGCGGUU----UGC- -5'
15669 5' -54.5 NC_004065.1 + 114820 0.67 0.967059
Target:  5'- ----cCGCGCGGG-UCGCGauCCGGAUGa -3'
miRNA:   3'- cacuaGUGCGCCCuAGCGC--GGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 144457 0.67 0.967059
Target:  5'- -cGAUCGCGaaGGcgaccAUgGCGCCGAACa -3'
miRNA:   3'- caCUAGUGCgcCC-----UAgCGCGGUUUGc -5'
15669 5' -54.5 NC_004065.1 + 145926 0.67 0.963894
Target:  5'- -cGGUCGuCGaaucCGGGAUCGUGUCGAGgGa -3'
miRNA:   3'- caCUAGU-GC----GCCCUAGCGCGGUUUgC- -5'
15669 5' -54.5 NC_004065.1 + 106425 0.67 0.963894
Target:  5'- uUGcUCACG-GGGAUCGCcagGCCcuuGACGa -3'
miRNA:   3'- cACuAGUGCgCCCUAGCG---CGGu--UUGC- -5'
15669 5' -54.5 NC_004065.1 + 127725 0.67 0.956941
Target:  5'- -cGGUgGCGcCGGGGUCGgGUCccGCGg -3'
miRNA:   3'- caCUAgUGC-GCCCUAGCgCGGuuUGC- -5'
15669 5' -54.5 NC_004065.1 + 24778 0.68 0.949126
Target:  5'- -----gGCGCGGGuaucUCGCGCC-AGCGc -3'
miRNA:   3'- cacuagUGCGCCCu---AGCGCGGuUUGC- -5'
15669 5' -54.5 NC_004065.1 + 130421 0.68 0.940422
Target:  5'- -aGAUgGCGcCGGGGUCGCGgauAGCGa -3'
miRNA:   3'- caCUAgUGC-GCCCUAGCGCgguUUGC- -5'
15669 5' -54.5 NC_004065.1 + 126167 0.68 0.935731
Target:  5'- aUGAUCGCGUGGugcgcGAUCGcCGUCAcGGCGu -3'
miRNA:   3'- cACUAGUGCGCC-----CUAGC-GCGGU-UUGC- -5'
15669 5' -54.5 NC_004065.1 + 68161 0.68 0.930811
Target:  5'- gGUGAUCGCgGCGGcGcgCGCGaCgGAGCu -3'
miRNA:   3'- -CACUAGUG-CGCC-CuaGCGC-GgUUUGc -5'
15669 5' -54.5 NC_004065.1 + 150619 0.68 0.930811
Target:  5'- cUGAUgACcCGGGAg-GUGCCGAACGu -3'
miRNA:   3'- cACUAgUGcGCCCUagCGCGGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 196482 0.69 0.925662
Target:  5'- aUGuccaGCGUGuaGAUCGCGCCGAACGu -3'
miRNA:   3'- cACuag-UGCGCc-CUAGCGCGGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 126759 0.69 0.916947
Target:  5'- -cGAUCgcgcggcgcauggcgACGCGGGugcagCGCGCCAAcaucGCGc -3'
miRNA:   3'- caCUAG---------------UGCGCCCua---GCGCGGUU----UGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.